Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_017979.1
Length=43376
Score E
Sequences producing significant alignments: (Bits) Value
seq7076 100 8e-17
seq27717 95.1 3e-15
seq3798 95.1 3e-15
>seq7076
Length=122421
Score = 100 bits (110), Expect = 8e-17
Identities = 191/276 (69%), Gaps = 18/276 (7%)
Strand=Plus/Plus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| || ||||| ||| ||||||| | || || || || || || | |
Sbjct 32275 TTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 32334
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | |
Sbjct 32335 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 32394
Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134
|||||||| || || ||| ||| | | || |||||| | ||||| ||| | |
Sbjct 32395 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCCCAGCTCA 32451
Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188
|||||| || || | |||| | ||| |||||| ||| ||| ||||| ||
Sbjct 32452 TTTGTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGACA 32505
Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224
| ||||||||||| | ||| ||||| || || ||||
Sbjct 32506 CTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 32541
>seq27717
Length=6327
Score = 95.1 bits (104), Expect = 3e-15
Identities = 190/276 (69%), Gaps = 18/276 (7%)
Strand=Plus/Plus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| || ||||| ||| ||||||| | || || || || || || | |
Sbjct 4133 TTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 4192
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| ||||| || |||||||| | ||| ||| | ||| || || ||||||||||| | |
Sbjct 4193 TAGATGTAGGAGCTGGTGTCGTAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 4252
Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134
|||||||| || || ||| ||| | | || |||||| | ||||| ||| | |
Sbjct 4253 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCCCAGCTCA 4309
Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188
|||||| || || | |||| | ||| |||||| ||| ||| ||||| ||
Sbjct 4310 TTTGTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGACA 4363
Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224
| ||||||||||| | ||| ||||| || || ||||
Sbjct 4364 CTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 4399
>seq3798
Length=195893
Score = 95.1 bits (104), Expect = 3e-15
Identities = 194/280 (69%), Gaps = 19/280 (7%)
Strand=Plus/Minus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| || ||||| ||| ||||||| | || | || || || || | |
Sbjct 80317 TTCCTTCTGGGTGCTATGGGAGAGTAGCTCCATGTTCTAGCTTGGCTGCAAAACACTTCA 80258
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| ||||| | |||||||| || ||| ||| | ||| || || ||||||||||| |||
Sbjct 80257 TAGATGTAGAAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTAT 80198
Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAG-GTGATAGGATTGCTCAGTTA 1133
|||||| | || || ||| ||| | | | || || |||||| ||||| ||| |
Sbjct 80197 TTAATTGTGGCAAAGAAAAG---TTTGA-AGTAAAAAAGTGTGATAAAATTGCACAGCTC 80142
Query 1134 ATTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGAT 1187
||||||||| || | ||||| | ||| |||||| ||| ||| ||||| ||
Sbjct 80141 ATTTGTGAACAGATTTTTTTT--ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGAC 80086
Query 1188 TCGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGG-AAGA 1226
| | ||||||||| | ||| ||||| ||||| || ||||
Sbjct 80085 ACTGTAAGGGGTTCAGGAGGTTTTGGTTCTACAGGTAAGA 80046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138587395582668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |