Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq7076 100 8e-17 seq27717 95.1 3e-15 seq3798 95.1 3e-15 >seq7076 Length=122421 Score = 100 bits (110), Expect = 8e-17 Identities = 191/276 (69%), Gaps = 18/276 (7%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| | || || || || || || | | Sbjct 32275 TTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 32334 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 32335 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 32394 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || |||||| | ||||| ||| | | Sbjct 32395 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCCCAGCTCA 32451 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 |||||| || || | |||| | ||| |||||| ||| ||| ||||| || Sbjct 32452 TTTGTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGACA 32505 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 32506 CTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 32541 >seq27717 Length=6327 Score = 95.1 bits (104), Expect = 3e-15 Identities = 190/276 (69%), Gaps = 18/276 (7%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| | || || || || || || | | Sbjct 4133 TTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 4192 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| | ||| ||| | ||| || || ||||||||||| | | Sbjct 4193 TAGATGTAGGAGCTGGTGTCGTAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 4252 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || |||||| | ||||| ||| | | Sbjct 4253 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCCCAGCTCA 4309 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 |||||| || || | |||| | ||| |||||| ||| ||| ||||| || Sbjct 4310 TTTGTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGACA 4363 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 4364 CTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 4399 >seq3798 Length=195893 Score = 95.1 bits (104), Expect = 3e-15 Identities = 194/280 (69%), Gaps = 19/280 (7%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| | || | || || || || | | Sbjct 80317 TTCCTTCTGGGTGCTATGGGAGAGTAGCTCCATGTTCTAGCTTGGCTGCAAAACACTTCA 80258 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| | |||||||| || ||| ||| | ||| || || ||||||||||| ||| Sbjct 80257 TAGATGTAGAAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTAT 80198 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAG-GTGATAGGATTGCTCAGTTA 1133 |||||| | || || ||| ||| | | | || || |||||| ||||| ||| | Sbjct 80197 TTAATTGTGGCAAAGAAAAG---TTTGA-AGTAAAAAAGTGTGATAAAATTGCACAGCTC 80142 Query 1134 ATTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGAT 1187 ||||||||| || | ||||| | ||| |||||| ||| ||| ||||| || Sbjct 80141 ATTTGTGAACAGATTTTTTTT--ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGAC 80086 Query 1188 TCGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGG-AAGA 1226 | | ||||||||| | ||| ||||| ||||| || |||| Sbjct 80085 ACTGTAAGGGGTTCAGGAGGTTTTGGTTCTACAGGTAAGA 80046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138587395582668