Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq18093 98.7 8e-16 seq3805 86.0 5e-12 seq6983 82.4 6e-11 >seq18093 Length=33488 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | || |||||||| ||||| || || |||||||| | Sbjct 2800 CCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 2859 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||| || || |||||||| || | | ||| || || || || Sbjct 2860 AGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2919 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||| || || || || || | || | |||||| | ||||| Sbjct 2920 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2979 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || ||||| || || || || || || |||||||| Sbjct 2980 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 3026 >seq3805 Length=195799 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | |||| |||| || Sbjct 70995 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCATCTGT 70936 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| | | | ||| || || || || |||||||||||||| || || || Sbjct 70935 TTGCCTGCAAAGAGGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTG 70876 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||| | |||||| || | |||| || |||| ||| Sbjct 70875 GCCTTCACA--TTCT-CGGTGTCACTGGGTTCCACCTCCGGGGTGATGGTCTTGCAGGTC 70819 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || | || |||||||| Sbjct 70818 AGGGTCTTCATGAAGATCTGCAT 70796 >seq6983 Length=123737 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGG-CGATAGTTCTGGCATCGTCCAATTGCTTAC 101330 ||| || || ||||| || ||||| || | ||| ||| | |||| |||| |||||| | Sbjct 100598 GGTGGACTCCTTTTGAATGTTGTAGTCAGACGA-AGTATGGCCATCCTCCAGTTGCTTGC 100656 Query 101331 CTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTT 101390 | ||||| |||| | || || | || || || ||||||||||| || || || | Sbjct 100657 CAGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCT 100716 Query 101391 TTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAG 101450 ||||| |||||| || || || | ||| || | ||||||| || || || || | | Sbjct 100717 TTACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGG 100776 Query 101451 TTTTTACAAATATCTGCAT 101469 | || | || |||||||| Sbjct 100777 TCTTCATGAAAATCTGCAT 100795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396002129931471