Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2119 174 3e-38 seq1525 168 1e-36 seq6 150 3e-31 seq36034 145 1e-29 seq3875 98.7 2e-15 seq3603 86.0 1e-11 >seq2119 Length=279462 Score = 174 bits (192), Expect = 3e-38 Identities = 182/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| || | Sbjct 157467 GCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGCTCGC 157408 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || | | || || ||||||| || ||||| || | |||||| |||||| || | Sbjct 157407 GGAGGAGGCCGGCAGTGCTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACCTTGT 157348 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| |||| Sbjct 157347 CCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCGGT 157288 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||| || | ||| || || | |||||||| |||||||| ||||||| ||| || ||| Sbjct 157287 TCCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGAC 157229 >seq1525 Length=329219 Score = 168 bits (186), Expect = 1e-36 Identities = 385/572 (67%), Gaps = 13/572 (2%) Strand=Plus/Minus Query 48091 CTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAA 48150 ||| || ||||||| ||||||| ||| | | || |||||||||||| | ||| || Sbjct 304912 CTCCGAAGGTTTGTGTAGCAGGTGTTTGA---ACATCAGGCAGGCAAAGTCACAGTGTAA 304856 Query 48151 GCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTG 48210 || ||||| | ||| || || | ||||| || ||| || ||||| | || | | Sbjct 304855 ACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTT 304796 Query 48211 TTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAA 48270 ||||||||||| || | || ||||| ||||| ||||||||||| |||||||| || || Sbjct 304795 CTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAA 304736 Query 48271 CGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCAGT 48329 || ||| | ||||| | | ||| | |||| ||||||| | ||| ||||| | Sbjct 304735 GGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCCTCGATCCAGCGCAAG-GCCCAAT 304677 Query 48330 CTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCAC 48389 ||||||||||||| | || ||||| ||||| ||||| |||||| | | || Sbjct 304676 CTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAGATTCCCTTTCTT 304617 Query 48390 CTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCT 48446 | || ||| || || | |||| || | ||||| || || || | || | Sbjct 304616 TGGAATCTTTAACGTAAGTGTCATTGAGGAGACT---ATACATTTCCGAATGTATGTTTT 304560 Query 48447 CTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGA 48506 | || || || ||||| || ||||| | | ||| || || ||| ||||| ||| | Sbjct 304559 CCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTCCGTCATCTGAGCTTCT-TGGCTA 304501 Query 48507 A-TCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACA 48565 | | ||||| ||| || ||||| |||| ||||| || ||| |||| || |||||| Sbjct 304500 AGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGCTGCAGAGAAAGCCAGGACA 304441 Query 48566 TGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCC 48625 || || |||||| | ||| | | | || || | || | ||| | ||| | | Sbjct 304440 TGCGAAATGAAATGTCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTGAATGTCCTAGGAA 304381 Query 48626 AGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||||||| || || | |||||| |||| || Sbjct 304380 AGGTCCACCTCCTCAGCCGTCCAGCAGGAAGC 304349 >seq6 Length=1634941 Score = 150 bits (166), Expect = 3e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 1098524 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 1098465 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | ||||||| ||||||||||||||| || |||| |||||| ||||| Sbjct 1098464 TCCGTGTTTTGACTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 1098405 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||| Sbjct 1098404 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 1098345 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 1098344 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1098312 >seq36034 Length=1448 Score = 145 bits (160), Expect = 1e-29 Identities = 361/542 (67%), Gaps = 16/542 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||| ||||||| |||||||| |||| || || ||| | Sbjct 548 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCCC 489 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| || || || | | | | | | || || | | |||| || ||||| Sbjct 488 CATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTAAAACCCAGCT---CCAGC 434 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || || | |||||||| | ||| | ||| ||||| || ||| Sbjct 433 ATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 374 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| |||| |||| ||||| ||||||| |||||| || || | | | Sbjct 373 AGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATT 314 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | || || | ||| || ||||||| ||||||| ||| | | || |||| Sbjct 313 ATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGA---ACATCAGGCAG 257 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||| || || ||||| | ||| || || | ||||| || ||| | Sbjct 256 GCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCTG 197 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | |||||||||||| || | || ||||| |||| | ||||| Sbjct 196 GGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAG---AAAAGATT 140 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || |||||||| | || || | || | ||||| | | ||| | ||||| |||| Sbjct 139 CCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTGTCCCCGATC 80 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 ||| | | ||||| |||| ||||||||| | || ||||| ||||| || || |||| Sbjct 79 CAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAG 20 Query 48374 AG 48375 || Sbjct 19 AG 18 >seq3875 Length=193743 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| || ||||| || | ||||| |||| ||| Sbjct 31962 TTCACTTTTTCCTCCAGCCGGGCGATCCGCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 32021 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 32022 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 32081 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 32082 ATGGGGGAC 32090 >seq3603 Length=202440 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || || |||||||| ||| Sbjct 21178 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCTAGGTTCTGCTGG 21119 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 21118 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 21060 Query 213647 GGAC 213650 ||| Sbjct 21059 AGAC 21056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930866719115520