Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2119 174 3e-38
seq1525 168 1e-36
seq6 150 3e-31
seq36034 145 1e-29
seq3875 98.7 2e-15
seq3603 86.0 1e-11
>seq2119
Length=279462
Score = 174 bits (192), Expect = 3e-38
Identities = 182/239 (76%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448
|||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| || |
Sbjct 157467 GCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGCTCGC 157408
Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508
| || | | || || ||||||| || ||||| || | |||||| |||||| || |
Sbjct 157407 GGAGGAGGCCGGCAGTGCTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACCTTGT 157348
Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568
||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| ||||
Sbjct 157347 CCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCGGT 157288
Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
|||| || | ||| || || | |||||||| |||||||| ||||||| ||| || |||
Sbjct 157287 TCCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGAC 157229
>seq1525
Length=329219
Score = 168 bits (186), Expect = 1e-36
Identities = 385/572 (67%), Gaps = 13/572 (2%)
Strand=Plus/Minus
Query 48091 CTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAA 48150
||| || ||||||| ||||||| ||| | | || |||||||||||| | ||| ||
Sbjct 304912 CTCCGAAGGTTTGTGTAGCAGGTGTTTGA---ACATCAGGCAGGCAAAGTCACAGTGTAA 304856
Query 48151 GCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTG 48210
|| ||||| | ||| || || | ||||| || ||| || ||||| | || | |
Sbjct 304855 ACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTT 304796
Query 48211 TTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAA 48270
||||||||||| || | || ||||| ||||| ||||||||||| |||||||| || ||
Sbjct 304795 CTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAA 304736
Query 48271 CGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCAGT 48329
|| ||| | ||||| | | ||| | |||| ||||||| | ||| ||||| |
Sbjct 304735 GGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCCTCGATCCAGCGCAAG-GCCCAAT 304677
Query 48330 CTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCAC 48389
||||||||||||| | || ||||| ||||| ||||| |||||| | | ||
Sbjct 304676 CTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAGATTCCCTTTCTT 304617
Query 48390 CTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCT 48446
| || ||| || || | |||| || | ||||| || || || | || |
Sbjct 304616 TGGAATCTTTAACGTAAGTGTCATTGAGGAGACT---ATACATTTCCGAATGTATGTTTT 304560
Query 48447 CTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGA 48506
| || || || ||||| || ||||| | | ||| || || ||| ||||| ||| |
Sbjct 304559 CCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTCCGTCATCTGAGCTTCT-TGGCTA 304501
Query 48507 A-TCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACA 48565
| | ||||| ||| || ||||| |||| ||||| || ||| |||| || ||||||
Sbjct 304500 AGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGCTGCAGAGAAAGCCAGGACA 304441
Query 48566 TGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCC 48625
|| || |||||| | ||| | | | || || | || | ||| | ||| | |
Sbjct 304440 TGCGAAATGAAATGTCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTGAATGTCCTAGGAA 304381
Query 48626 AGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
|||||||| || || | |||||| |||| ||
Sbjct 304380 AGGTCCACCTCCTCAGCCGTCCAGCAGGAAGC 304349
>seq6
Length=1634941
Score = 150 bits (166), Expect = 3e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 1098524 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 1098465
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | | ||||||| ||||||||||||||| || |||| |||||| |||||
Sbjct 1098464 TCCGTGTTTTGACTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 1098405
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||
Sbjct 1098404 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 1098345
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 1098344 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1098312
>seq36034
Length=1448
Score = 145 bits (160), Expect = 1e-29
Identities = 361/542 (67%), Gaps = 16/542 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || || ||||| |||||| ||||||| |||||||| |||| || || ||| |
Sbjct 548 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCCC 489
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956
||| ||| || || || | | | | | | || || | | |||| || |||||
Sbjct 488 CATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTAAAACCCAGCT---CCAGC 434
Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013
| | || || || | |||||||| | ||| | ||| ||||| || |||
Sbjct 433 ATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 374
Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073
|| ||| |||| |||| ||||| ||||||| |||||| || || | | |
Sbjct 373 AGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATT 314
Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133
|| | || || | ||| || ||||||| ||||||| ||| | | || ||||
Sbjct 313 ATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGA---ACATCAGGCAG 257
Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193
|||||||| | ||| || || ||||| | ||| || || | ||||| || ||| |
Sbjct 256 GCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCTG 197
Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253
||||| | || | | |||||||||||| || | || ||||| |||| | |||||
Sbjct 196 GGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAG---AAAAGATT 140
Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313
|| |||||||| | || || | || | ||||| | | ||| | ||||| ||||
Sbjct 139 CCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTGTCCCCGATC 80
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373
||| | | ||||| |||| ||||||||| | || ||||| ||||| || || ||||
Sbjct 79 CAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAG 20
Query 48374 AG 48375
||
Sbjct 19 AG 18
>seq3875
Length=193743
Score = 98.7 bits (108), Expect = 2e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| || ||||| || | ||||| |||| |||
Sbjct 31962 TTCACTTTTTCCTCCAGCCGGGCGATCCGCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 32021
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 32022 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 32081
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 32082 ATGGGGGAC 32090
>seq3603
Length=202440
Score = 86.0 bits (94), Expect = 1e-11
Identities = 95/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|| ||||| | || || |||||||||||||||||| ||| || || |||||||| |||
Sbjct 21178 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCTAGGTTCTGCTGG 21119
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| || || | || ||||| |||||||||||||| |||| || |||||| |||
Sbjct 21118 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 21060
Query 213647 GGAC 213650
|||
Sbjct 21059 AGAC 21056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930866719115520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |