Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 140 6e-28
seq36034 111 3e-19
seq1670 87.8 3e-12
>seq1525
Length=329219
Score = 140 bits (154), Expect = 6e-28
Identities = 321/472 (68%), Gaps = 15/472 (3%)
Strand=Plus/Plus
Query 25601 TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCA 25660
|||| |||| |||||| |||||| |||| || || || ||| ||| | | | |
Sbjct 304446 TGGCTTTCTCTGCAGCAAGTGATGGCGTAGTAAATGAAAACCTGGTGGAGCGGCTTAGCC 304505
Query 25661 GGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719
|||| ||| ||| ||| ||| |||||| || ||||| || ||||| |||||
Sbjct 304506 AAGAAGCTCAGATGACGGAAGCCC-GTGATTTCTATGGCTTCCAAATTGCCATGGAAAAC 304564
Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGA-TGACG--TACATTACAGACGTCGCCGAG 25776
| || || || ||||| | || || | |||| ||| ||| ||| | ||
Sbjct 304565 ATACATTCGGAAATGTAT---AGTCTCCTCAATGACACTTACGTTAAAGATTCCAAAGAA 304621
Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836
|| || || || ||||| ||| || || | | |||| |||||| |||
Sbjct 304622 AGGGAATCTCTCTTCAACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGG 304681
Query 25837 GCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895
||| || |||||| | | ||||| ||||||| ||| || || | ||||||||||
Sbjct 304682 GCCTTGCGCTGGATCGAGGACACAGAG-GCTACGTATGGAGAACGTGTCATAGCCTTTGC 304740
Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAA 25955
|| ||||| |||||||| || ||||| ||||| | || |||||||||||| | |
Sbjct 304741 CGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAG-AAAC 304799
Query 25956 GGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014
| |||| |||||||| || |||||||| || || || ||||| ||||||||| | |
Sbjct 304800 GAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTAC 304859
Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066
|| | || |||||||||||| | | || ||| |||| |||||||||||
Sbjct 304860 ACTGTGACTTTGCCTGCCTGATGTTCA---AACACCTGCTACACAAACCTTC 304908
>seq36034
Length=1448
Score = 111 bits (122), Expect = 3e-19
Identities = 153/209 (73%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918
|||| ||||||| ||| || || | | |||||||| ||| ||||| || |||||||
Sbjct 92 AGAG-GCTACGTATGGAGAACGTGTCGCAGCCTTTGTTGCAGTGGAAGGAATCTTTTCT- 149
Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC 25977
||||| ||||| | || ||||||||||| | | | || | |||||| | ||
Sbjct 150 --GGTTCTTTTGCATCGATATTCTGGCTCAAAAA-ACGAGGTCTGATGCCCAGCCTCACA 206
Query 25978 TTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTC 26037
|||||||| || || || ||||| ||||||||| | ||| | || |||||||||||| |
Sbjct 207 TTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATG 266
Query 26038 TACACGGGCCACTTGCTCCACAAACCTTC 26066
| || ||| |||| |||||||||||
Sbjct 267 TTCA---AACACCTGCTACACAAACCTTC 292
>seq1670
Length=315515
Score = 87.8 bits (96), Expect = 3e-12
Identities = 100/129 (78%), Gaps = 4/129 (3%)
Strand=Plus/Minus
Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939
|| |||| |||||||||||||| || || || || ||| || || ||||| || || |
Sbjct 206502 GGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 206443
Query 25940 TCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTT-CCAACGAGCTCATCAG 25997
||||||| ||| | ||| |||| ||||| || || ||||||| |||| || ||||||||
Sbjct 206442 TCTGGCTAAAGAA-AAGAGGACTTATGCCTGGACT-TACTTTTTCCAATGAACTCATCAG 206385
Query 25998 CAGGGACGA 26006
||| || ||
Sbjct 206384 CAGAGATGA 206376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928180641136320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |