Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1525 140 6e-28 seq36034 111 3e-19 seq1670 87.8 3e-12 >seq1525 Length=329219 Score = 140 bits (154), Expect = 6e-28 Identities = 321/472 (68%), Gaps = 15/472 (3%) Strand=Plus/Plus Query 25601 TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCA 25660 |||| |||| |||||| |||||| |||| || || || ||| ||| | | | | Sbjct 304446 TGGCTTTCTCTGCAGCAAGTGATGGCGTAGTAAATGAAAACCTGGTGGAGCGGCTTAGCC 304505 Query 25661 GGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 |||| ||| ||| ||| ||| |||||| || ||||| || ||||| ||||| Sbjct 304506 AAGAAGCTCAGATGACGGAAGCCC-GTGATTTCTATGGCTTCCAAATTGCCATGGAAAAC 304564 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGA-TGACG--TACATTACAGACGTCGCCGAG 25776 | || || || ||||| | || || | |||| ||| ||| ||| | || Sbjct 304565 ATACATTCGGAAATGTAT---AGTCTCCTCAATGACACTTACGTTAAAGATTCCAAAGAA 304621 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 || || || || ||||| ||| || || | | |||| |||||| ||| Sbjct 304622 AGGGAATCTCTCTTCAACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGG 304681 Query 25837 GCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 ||| || |||||| | | ||||| ||||||| ||| || || | |||||||||| Sbjct 304682 GCCTTGCGCTGGATCGAGGACACAGAG-GCTACGTATGGAGAACGTGTCATAGCCTTTGC 304740 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAA 25955 || ||||| |||||||| || ||||| ||||| | || |||||||||||| | | Sbjct 304741 CGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAG-AAAC 304799 Query 25956 GGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 | |||| |||||||| || |||||||| || || || ||||| ||||||||| | | Sbjct 304800 GAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTAC 304859 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 || | || |||||||||||| | | || ||| |||| ||||||||||| Sbjct 304860 ACTGTGACTTTGCCTGCCTGATGTTCA---AACACCTGCTACACAAACCTTC 304908 >seq36034 Length=1448 Score = 111 bits (122), Expect = 3e-19 Identities = 153/209 (73%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 |||| ||||||| ||| || || | | |||||||| ||| ||||| || ||||||| Sbjct 92 AGAG-GCTACGTATGGAGAACGTGTCGCAGCCTTTGTTGCAGTGGAAGGAATCTTTTCT- 149 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC 25977 ||||| ||||| | || ||||||||||| | | | || | |||||| | || Sbjct 150 --GGTTCTTTTGCATCGATATTCTGGCTCAAAAA-ACGAGGTCTGATGCCCAGCCTCACA 206 Query 25978 TTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTC 26037 |||||||| || || || ||||| ||||||||| | ||| | || |||||||||||| | Sbjct 207 TTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATG 266 Query 26038 TACACGGGCCACTTGCTCCACAAACCTTC 26066 | || ||| |||| ||||||||||| Sbjct 267 TTCA---AACACCTGCTACACAAACCTTC 292 >seq1670 Length=315515 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||||||||| || || || || ||| || || ||||| || || | Sbjct 206502 GGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 206443 Query 25940 TCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTT-CCAACGAGCTCATCAG 25997 ||||||| ||| | ||| |||| ||||| || || ||||||| |||| || |||||||| Sbjct 206442 TCTGGCTAAAGAA-AAGAGGACTTATGCCTGGACT-TACTTTTTCCAATGAACTCATCAG 206385 Query 25998 CAGGGACGA 26006 ||| || || Sbjct 206384 CAGAGATGA 206376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928180641136320