Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq6451 360 2e-94 seq8405 183 4e-41 seq8580 107 2e-18 >seq6451 Length=132943 Score = 360 bits (398), Expect = 2e-94 Identities = 677/988 (69%), Gaps = 17/988 (2%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| |||||| || || || Sbjct 90508 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCATGTCGAACTTGTTGGC 90567 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||||| ||||| || | | ||||||| || ||| || | ||||| || || || Sbjct 90568 GAACAAGTGGTGCACGCGC---AACATCCAGTTCAAGTCACCCGCTCCGAAAACACACAC 90624 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| |||||| |||| |||||||| | || || || | | ||||||||| Sbjct 90625 GGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAATGTCACCTTC 90684 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| || | Sbjct 90685 AAAGTACTGCCACTTGACAAACCTGGCAATCGCGTGCATGTCGGACATGTCGTACTTATG 90744 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || |||| || | ||| | |||||||| || | || Sbjct 90745 GCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 90804 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA-TTAACCTGTCCCGCA 160410 ||| |||||||| ||||| || | ||| ||||| |||| | | || | || || | Sbjct 90805 GTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTATTTTTTCATTCTCG-A 90863 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | || | || || || | || ||||| || || ||||| || || | ||| Sbjct 90864 GCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTG 90923 Query 160471 TGGGTATAGGCGGCGTGT-CTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| |||||| || |||| | || | ||| ||||| | Sbjct 90924 TTTCAAGAGGAGG-ATGTATTTTGTCGGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 90982 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 || | |||| |||||||| | | || | | |||||| | ||||| ||||| || Sbjct 90983 GCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCCGTTTCTAGGTTG 91042 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || | || | ||| || |||| | |||| || || ||||| || || | ||||| Sbjct 91043 TTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 91102 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | ||||||| ||||||||| | ||| ||| || |||||| | Sbjct 91103 TCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTCGGTAGAGGTCCTGC 91162 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | || ||||| || |||||||| || || ||||| || |||| || | | Sbjct 91163 ATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAACACTCTCCAGCTGA 91222 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA- 160825 |||||||| ||||| ||| |||||| || | || || ||| | |||| |||| | Sbjct 91223 CTGGCCACGAAGACATTACTGAAACAGGATGCAATGCCAATCACTGCGGCCAAAAAGGAT 91282 Query 160826 -CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 | ||| || ||| |||||||| | |||||| | ||||||||| || |||| Sbjct 91283 TCCTCTGAT-----TTTGTATCCACGTGAATGCAATAGAAATTCTGAGGCATATAAATGG 91337 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 |||| || | ||| || | ||| || || || ||||| | ||| | ||| || ||||| | Sbjct 91338 CCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAGAATATGCTATTG 91397 Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004 ||||||| | ||| || ||| |||| | | || || ||| ||||||| ||| Sbjct 91398 GAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGCTTCTTGATGAAAG 91457 Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032 || ||||||| | |||||||| || || Sbjct 91458 AAGCACAATCACTGGTCATGTTTATGTA 91485 >seq8405 Length=104879 Score = 183 bits (202), Expect = 4e-41 Identities = 227/311 (73%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || |||||||||||| || Sbjct 50053 AGAGTGAGGCAGGCTATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTG 50112 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 50113 TAACACCCTTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCGTGAGTCCC 50172 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || ||||| | ||| || || ||||| || ||||||| | Sbjct 50173 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGTTCTGG 50232 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 || |||||| |||||| || ||||| ||||| || || ||||| || || |||||| Sbjct 50233 CTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAGA 50292 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | ||||| || ||||| | ||||| || |||||||||| |||| Sbjct 50293 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAACTCTCTT 50352 Query 168453 TCATCTTGAGT 168463 ||||||| || Sbjct 50353 ACATCTTGGGT 50363 Score = 102 bits (112), Expect = 9e-17 Identities = 146/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 167898 GTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTT 167957 || ||||| |||| || ||||||| ||| ||||| || || || || |||||||| Sbjct 47444 GTCACAGTCCCCAGGTGCAGTACCTGGCAGATCACATCC---TTCCCCACCTGACTCTTG 47500 Query 167958 GGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTT 168017 || ||||| | || | ||||| || ||| ||| || |||||| | ||| | | Sbjct 47501 GGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTCCCATTGGGGTGTGCGATAATC 47560 Query 168018 TTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGT 168077 | || |||||||||||| |||| || | ||||||||| | || | ||| || || || Sbjct 47561 TCAGTACTGTTCTCAATCTCTGAGCCAGAGACCTTCCAGGAGATCATAGGGGCTGGGCGA 47620 Query 168078 GCTGTAGCAGAGCAGGTAATATTTA 168102 || | |||||||| || ||||||| Sbjct 47621 GCATTGGCAGAGCAAGTGATATTTA 47645 >seq8580 Length=102708 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| |||||| | | ||||| ||| Sbjct 81440 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 81499 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 81500 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 81559 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 81560 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 81619 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 81620 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 81679 Query 176422 TACA 176425 | || Sbjct 81680 TGCA 81683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576806466626280