Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1525 107 3e-18 >seq1525 Length=329219 Score = 107 bits (118), Expect = 3e-18 Identities = 230/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| ||||||||| || |||||| || | ||| || ||| || | Sbjct 304875 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 304816 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 |||||||| | |||| ||| || ||||| ||||||||||| ||| || ||||||||| Sbjct 304815 CCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 304756 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTATTTAT-TGCTCA 18335 || || || || || || ||||| | | ||| || | | | | | | | ||| Sbjct 304755 ATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCCTC- 304697 Query 18336 GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 ||||| ||||| ||| | | | ||| || || |||| || || | Sbjct 304696 -GATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGT 304638 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 | || | | || |||||||||||||||| | |||||||| | | | | ||||| Sbjct 304637 TGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATACA 304578 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAA 18498 |||| ||||||||| ||||||| || || || || | ||| || Sbjct 304577 TTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAA 304535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731348684074800