Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 107 3e-18
>seq1525
Length=329219
Score = 107 bits (118), Expect = 3e-18
Identities = 230/343 (67%), Gaps = 4/343 (1%)
Strand=Plus/Minus
Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217
|| ||||| ||| ||||||||| || |||||| || | ||| || ||| || |
Sbjct 304875 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 304816
Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277
|||||||| | |||| ||| || ||||| ||||||||||| ||| || |||||||||
Sbjct 304815 CCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 304756
Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTATTTAT-TGCTCA 18335
|| || || || || || ||||| | | ||| || | | | | | | | |||
Sbjct 304755 ATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCCTC- 304697
Query 18336 GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395
||||| ||||| ||| | | | ||| || || |||| || || |
Sbjct 304696 -GATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGT 304638
Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455
| || | | || |||||||||||||||| | |||||||| | | | | |||||
Sbjct 304637 TGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATACA 304578
Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAA 18498
|||| ||||||||| ||||||| || || || || | ||| ||
Sbjct 304577 TTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAA 304535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731348684074800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |