Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6983 102 2e-16 seq561 100 6e-16 seq5560 95.1 2e-14 seq10582 93.3 8e-14 seq18093 91.5 3e-13 seq17051 89.7 1e-12 seq1525 89.7 1e-12 seq2392 86.0 1e-11 seq1608 86.0 1e-11 >seq6983 Length=123737 Score = 102 bits (112), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| | || | |||| |||| ||| || |||||||||| Sbjct 100607 CTTTTGA-ATGTTGTAGTCAGACGAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAGA 100665 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || || | ||| || |||||||||||||| || || || |||||||| Sbjct 100666 TCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTT 100725 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | |||||| | ||| || | ||||| ||||| || || || | || || || | Sbjct 100726 CTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGA 100785 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 100786 AAATCTGCATCTT 100798 >seq561 Length=508305 Score = 100 bits (110), Expect = 6e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| ||| ||| || || || || |||| Sbjct 125897 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGA-ATGTTGTAGTCAG 125839 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| | Sbjct 125838 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 125779 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| || || || || || ||||| || ||| | ||| | | ||| | Sbjct 125778 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGA 125719 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || || | || || | || |||||||| || Sbjct 125718 CCTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667 >seq5560 Length=149305 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | | ||| | ||| | ||||| ||| ||| || || || || |||| Sbjct 93423 ACCACCATGAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 93365 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| | Sbjct 93364 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 93305 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT-TATAGAATCTGACGATTCT 192486 | |||||||| || || || | || |||||||| | ||| | ||| || | ||| Sbjct 93304 GAATTCCTTCCTTGTCCTGGCTCTTGGCCTTTACATTTTTCTATTGCATCCGAGGGTTCA 93245 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| ||| | || || | || || | || |||||||| || Sbjct 93244 ACCTCGAGAGTGATGCCCATCCCTGTCAGGGTCTTCAAGAAAATCTGCATATT 93192 >seq10582 Length=81843 Score = 93.3 bits (102), Expect = 8e-14 Identities = 137/193 (71%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || || |||| |||| ||| || |||||||||| Sbjct 38554 CTTTTGA-ATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 38612 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || || ||||| || |||||||| || || || | || ||||| || Sbjct 38613 TCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGACCTTGGCCTTTACGTTTT 38672 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | ||| || | ||| || || ||||| ||||| || || || | || || | | Sbjct 38673 CTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGA 38732 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 38733 AAATCTGCATATT 38745 >seq18093 Length=33488 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| ||||| | || | || | |||| |||||| ||| || |||||||| Sbjct 2800 CCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 2859 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || | |||| |||| ||||| || |||||||| | ||||| || ||||| || Sbjct 2860 AGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2919 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| || || || || || || || | || | || || Sbjct 2920 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2979 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| || ||||| || || || | || ||||||||||| Sbjct 2980 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 3029 >seq17051 Length=38469 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || || | ||| | ||| | ||| ||| || || || || ||||| Sbjct 11473 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 11415 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| |||| ||| || ||||||||||| | ||| || | || | || Sbjct 11414 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGG 11355 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || || || || || ||||| || || | ||| || | ||| || Sbjct 11354 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGAC 11295 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || || | || || | || |||||||| || Sbjct 11294 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 11244 >seq1525 Length=329219 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||| ||| |||||||||||||| || |||| |||||| ||| || | Sbjct 304875 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 304816 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || ||||| | ||||| || || ||||| ||||| ||||||||| || ||||||||| Sbjct 304815 CCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 304756 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAAC 49985 || || || || ||||| ||||| | | | ||||| || Sbjct 304755 ATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATAC 304714 >seq2392 Length=260735 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| | ||||||||||| | ||| || || ||||| || |||||||| | Sbjct 4873 CATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCT 4814 Query 192440 TATCTTGTATTTTATTTTTTACATTAGT-TATAGAATCTGACGATTCTACTTCTAGAGTA 192498 |||| || || || |||||||| | | | | |||||| | ||| ||||| ||||| Sbjct 4813 TATCCTGGATCTTGACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAGTG 4754 Query 192499 ATGGT-TTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 ||||| | |||| || || || || || ||||||| Sbjct 4753 ATGGTCATCCCCAG--AAGGTCTTCATGAAAATCTGCA 4718 >seq1608 Length=321383 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/176 (70%), Gaps = 7/176 (4%) Strand=Plus/Plus Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||| Sbjct 105406 TCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCA 105465 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || |||||||| | | | ||| || | | Sbjct 105466 GGAGGAATTCCTTCCTTATCCTG-------GCCTTTACATTTTCTGTTGTATCCGAGGGT 105518 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| ||||| || || || | || || | || |||||||| || Sbjct 105519 TCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 105574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983758461379050