Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6983 105 1e-17 seq25372 98.7 2e-15 seq1014 96.9 6e-15 >seq6983 Length=123737 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||| || |||||||| || | ||| || |||| ||| || |||||||||||| Sbjct 100641 TCCTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTA 100700 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || |||||||| ||| |||||||| | ||| || | ||||| ||| Sbjct 100701 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATG 100760 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || | || || ||||| |||||||| || Sbjct 100761 GTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCATCTT 100798 >seq25372 Length=10183 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || ||||| | | ||||| || | | ||| | ||| | ||| || | | || Sbjct 9304 TTTCTTAGTACCAGCACGAAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTT 9245 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || ||||||||||| ||||| || || Sbjct 9244 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTTTGCTG 9185 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 || || || ||| | || |||||||| || || |||||||| | | ||||| || Sbjct 9184 GTTAGAAGGAATTACATCCTTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGA 9125 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || ||||| ||||| || || || | | || | || |||||||| Sbjct 9124 GGGTTCGACCTCCAGAGTGATGGTCTTCCCTGTCAGGATCTTCACAAAAATCTGCAT 9068 >seq1014 Length=401283 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || || ||||||| || || | || || || | || | |||||| |||||||| Sbjct 41487 ATGATGCCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAG 41546 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 ||||| | || || | || |||| ||||| || || ||||| | | ||| |||||| Sbjct 41547 TCTGACAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCA 41606 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || || || || ||||| |||||| ||| ||||| || || || | Sbjct 41607 GGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGC 41666 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| ||||| || || || || || || | || |||||||| Sbjct 41667 TCGACCTCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904488793817400