Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq6983 105 1e-17
seq25372 98.7 2e-15
seq1014 96.9 6e-15
>seq6983
Length=123737
Score = 105 bits (116), Expect = 1e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| |||| ||| || |||||||| || | ||| || |||| ||| || ||||||||||||
Sbjct 100641 TCCTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTA 100700
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
|| || || || |||||||| ||| |||||||| | ||| || | ||||| |||
Sbjct 100701 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATG 100760
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| || || || | || || ||||| |||||||| ||
Sbjct 100761 GTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCATCTT 100798
>seq25372
Length=10183
Score = 98.7 bits (108), Expect = 2e-15
Identities = 164/237 (69%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || ||||| | | ||||| || | | ||| | ||| | ||| || | | ||
Sbjct 9304 TTTCTTAGTACCAGCACGAAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTT 9245
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| ||| | || |||| ||| || ||||||||||| ||||| || ||
Sbjct 9244 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTTTGCTG 9185
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
|| || || ||| | || |||||||| || || |||||||| | | ||||| ||
Sbjct 9184 GTTAGAAGGAATTACATCCTTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGA 9125
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
| ||| || || ||||| ||||| || || || | | || | || ||||||||
Sbjct 9124 GGGTTCGACCTCCAGAGTGATGGTCTTCCCTGTCAGGATCTTCACAAAAATCTGCAT 9068
>seq1014
Length=401283
Score = 96.9 bits (106), Expect = 6e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| || ||||||| || || | || || || | || | |||||| ||||||||
Sbjct 41487 ATGATGCCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAG 41546
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
||||| | || || | || |||| ||||| || || ||||| | | ||| ||||||
Sbjct 41547 TCTGACAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCA 41606
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
||||| || || || || ||||| |||||| ||| ||||| || || || |
Sbjct 41607 GGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGC 41666
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || |||||||| ||||| || || || || || || | || ||||||||
Sbjct 41667 TCGACCTCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904488793817400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |