Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq25410 98.7 3e-15 seq1525 98.7 3e-15 seq662 89.7 2e-12 >seq25410 Length=10104 Score = 98.7 bits (108), Expect = 3e-15 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || | || | || ||||||||||||||||| ||| | | | Sbjct 9807 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 9866 Query 133136 TTATTTTGGACTTCAACTGAA---GTAGATTTATCCAAAGAC--CCAGCCCACTGGGAAG 133190 | ||||||| || ||||| || || | ||||| ||| ||| |||||||||| Sbjct 9867 TCCTTTTGGA---CAGCTGAAGAGGTGGACCTTTCCAAGGACATTCAG--CACTGGGAAG 9921 Query 133191 CCCTTACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGT 133249 |||| | || || | | |||| ||||| ||| || | || || ||||| || ||| Sbjct 9922 CCCTGAAGCCTGAGGAGAGATATTTCATTTCGCATG-TTCTGGCTTTCTTTGCAGCAAGT 9980 Query 133250 GATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAA 133309 ||||| || || ||||| || | ||||||| ||||||||| | | ||| Sbjct 9981 GATGGCATAGTAAATGAAAGCTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACGGAA 10040 Query 133310 GCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT 133357 |||| | || ||||| | || ||||| |||||||| ||||||||| Sbjct 10041 GCCCATTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCT 10088 >seq1525 Length=329219 Score = 98.7 bits (108), Expect = 3e-15 Identities = 307/463 (66%), Gaps = 12/463 (3%) Strand=Plus/Plus Query 133181 CACTGGGAAGCCCTTACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTT 133239 ||| |||||||||| | || || | |||||| ||||| ||| | | || || | Sbjct 304397 CACCGGGAAGCCCTGAAGCCTGAGGAGAGACATTTCATTTCGCATG-TCCTGGCTTTCTC 304455 Query 133240 TGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCA 133299 ||| || |||||||| | || |||||| | | ||| ||| ||||| ||| Sbjct 304456 TGCAGCAAGTGATGGCGTAGTAAATGAAAACCTGGTGGAGCGGCTTAGCCAAGAAGCTCA 304515 Query 133300 ACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTAT 133359 || | |||||||||| || ||||| | || ||||| |||||||| || ||||| Sbjct 304516 GATGACGGAAGCCCGTGATTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCGGA 304575 Query 133360 CACATAT--TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTA 133417 | ||| ||| ||| | ||| |||||| | |||||| || | | | | || Sbjct 304576 AATGTATAGTCTCCTCAA--TGACACTTACGTTAAAGATTCCAAAGAAAGGGAATCTCTC 304633 Query 133418 TTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATG 133476 |||||||||||| | || | | |||||| | || ||||| | || ||||| | || Sbjct 304634 TTCAACGCCATT-GAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTG 304692 Query 133477 GATCCAGGACA-AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGG 133535 |||| |||||| || | || | | || ||| || | || ||||| | ||| || | Sbjct 304693 GATCGAGGACACAGAG-GCTACGTATGGAGAACGTGTCATAGCCTTTGCCGCAGTGGAAG 304751 Query 133536 GCAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTA 133594 |||| || || |||| | || ||| || || || ||||| || || || || | | Sbjct 304752 GCATCTTCTTTTCTGGTTC-TTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATG 304810 Query 133595 CCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 || || || ||||| || ||||||||| || ||||||| Sbjct 304811 CCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGG 304853 >seq662 Length=471982 Score = 89.7 bits (98), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| || || || || ||||||| ||||| ||||| Sbjct 403134 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATGAGCCCCTCACGACCCCCCATGGCATG 403193 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| || || ||||| Sbjct 403194 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCACGGC 403252 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||| ||| || ||| ||| | ||||| ||||| |||| || || | || | | Sbjct 403253 TCTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAACCCAAACG 403312 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || ||||||||||| || Sbjct 403313 GGATCCGCTTGCCCTCCACGTTCTGCTGCCC 403343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470738885103411