Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq25410 98.7 3e-15
seq1525 98.7 3e-15
seq662 89.7 2e-12
>seq25410
Length=10104
Score = 98.7 bits (108), Expect = 3e-15
Identities = 198/288 (69%), Gaps = 12/288 (4%)
Strand=Plus/Plus
Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135
||||| || || || || | || | || ||||||||||||||||| ||| | | |
Sbjct 9807 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 9866
Query 133136 TTATTTTGGACTTCAACTGAA---GTAGATTTATCCAAAGAC--CCAGCCCACTGGGAAG 133190
| ||||||| || ||||| || || | ||||| ||| ||| ||||||||||
Sbjct 9867 TCCTTTTGGA---CAGCTGAAGAGGTGGACCTTTCCAAGGACATTCAG--CACTGGGAAG 9921
Query 133191 CCCTTACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGT 133249
|||| | || || | | |||| ||||| ||| || | || || ||||| || |||
Sbjct 9922 CCCTGAAGCCTGAGGAGAGATATTTCATTTCGCATG-TTCTGGCTTTCTTTGCAGCAAGT 9980
Query 133250 GATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAA 133309
||||| || || ||||| || | ||||||| ||||||||| | | |||
Sbjct 9981 GATGGCATAGTAAATGAAAGCTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACGGAA 10040
Query 133310 GCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT 133357
|||| | || ||||| | || ||||| |||||||| |||||||||
Sbjct 10041 GCCCATTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCT 10088
>seq1525
Length=329219
Score = 98.7 bits (108), Expect = 3e-15
Identities = 307/463 (66%), Gaps = 12/463 (3%)
Strand=Plus/Plus
Query 133181 CACTGGGAAGCCCTTACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTT 133239
||| |||||||||| | || || | |||||| ||||| ||| | | || || |
Sbjct 304397 CACCGGGAAGCCCTGAAGCCTGAGGAGAGACATTTCATTTCGCATG-TCCTGGCTTTCTC 304455
Query 133240 TGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCA 133299
||| || |||||||| | || |||||| | | ||| ||| ||||| |||
Sbjct 304456 TGCAGCAAGTGATGGCGTAGTAAATGAAAACCTGGTGGAGCGGCTTAGCCAAGAAGCTCA 304515
Query 133300 ACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTAT 133359
|| | |||||||||| || ||||| | || ||||| |||||||| || |||||
Sbjct 304516 GATGACGGAAGCCCGTGATTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCGGA 304575
Query 133360 CACATAT--TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTA 133417
| ||| ||| ||| | ||| |||||| | |||||| || | | | | ||
Sbjct 304576 AATGTATAGTCTCCTCAA--TGACACTTACGTTAAAGATTCCAAAGAAAGGGAATCTCTC 304633
Query 133418 TTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATG 133476
|||||||||||| | || | | |||||| | || ||||| | || ||||| | ||
Sbjct 304634 TTCAACGCCATT-GAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTG 304692
Query 133477 GATCCAGGACA-AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGG 133535
|||| |||||| || | || | | || ||| || | || ||||| | ||| || |
Sbjct 304693 GATCGAGGACACAGAG-GCTACGTATGGAGAACGTGTCATAGCCTTTGCCGCAGTGGAAG 304751
Query 133536 GCAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTA 133594
|||| || || |||| | || ||| || || || ||||| || || || || | |
Sbjct 304752 GCATCTTCTTTTCTGGTTC-TTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATG 304810
Query 133595 CCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637
|| || || ||||| || ||||||||| || |||||||
Sbjct 304811 CCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGG 304853
>seq662
Length=471982
Score = 89.7 bits (98), Expect = 2e-12
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666
|||||| || || || |||||||| || || || || ||||||| ||||| |||||
Sbjct 403134 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATGAGCCCCTCACGACCCCCCATGGCATG 403193
Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725
|||||| | ||| || ||| || || | | ||||| |||| || || |||||
Sbjct 403194 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCACGGC 403252
Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785
||| ||| || ||| ||| | ||||| ||||| |||| || || | || | |
Sbjct 403253 TCTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAACCCAAACG 403312
Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816
|||| ||||| || || ||||||||||| ||
Sbjct 403313 GGATCCGCTTGCCCTCCACGTTCTGCTGCCC 403343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1470738885103411
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |