Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq561 122 8e-23 seq17051 120 3e-22 seq10582 118 1e-21 seq6983 113 4e-20 seq1014 107 2e-18 seq393 93.3 4e-14 seq5560 91.5 1e-13 seq25372 89.7 5e-13 seq3805 82.4 7e-11 >seq561 Length=508305 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || ||||| || ||| || | Sbjct 125670 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTGC 125729 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| ||||| |||||||| ||||| |||||||| ||||| || || Sbjct 125730 GATACAATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 125789 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || || || ||||| ||| | | |||| || || ||| Sbjct 125790 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 125849 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| | || || || | |||||| || | || || || Sbjct 125850 ATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 125896 >seq17051 Length=38469 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || ||||| || ||| || | Sbjct 11247 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 11306 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| ||||| |||||||| ||||| |||||||| |||| ||| | Sbjct 11307 GATACAATGGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGACCGG 11366 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || || || ||||| ||| | | |||| || || ||| Sbjct 11367 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 11426 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||||||||| || || || || | |||||| || | || || |||| Sbjct 11427 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGCG 11475 >seq10582 Length=81843 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || ||||| || ||| || | Sbjct 38742 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 38683 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| ||||| ||| |||| ||||| |||||||| ||||| || || Sbjct 38682 GATACAATAGAAAACGTAAAGGCCAAGGTCCAGGACAAGGAAGGAATTCCTCCTGACCAG 38623 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATAA 24882 ||| | |||||||||| || || || ||||| ||| || | || | ||| || || || Sbjct 38622 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATG-GACATACTTTGTCTGACTACAA 38564 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||| | || || || | |||||| || Sbjct 38563 CATTCAAAAGGAGTTCACGCTTCATCTTGTGTTGAGA 38527 >seq6983 Length=123737 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || || || || || || || ||| | || ||| | | Sbjct 100796 GATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTCAAGGTTGAACCTTC 100737 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 100736 AGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCTAACCA 100677 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881 ||| | |||||||||| || || || |||||||| | | | || | ||| || || | Sbjct 100676 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAGGA-TGGCCATACTTCGTCTGACTACA 100618 Query 24882 ACATTCAAAAGGAATCGAC 24900 ||||||||||||| || || Sbjct 100617 ACATTCAAAAGGAGTCCAC 100599 >seq1014 Length=401283 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || || || || || || || || || || ||| Sbjct 41720 GATGCAGATCTTAGTGAAGACCTTGACGGGCAAGACCATCACTCTAGAGGTCGAGCCCAG 41661 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || ||||||||||| || || || || || || || Sbjct 41660 TGACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 41601 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| || || || ||||||||||||||| | | ||||||| ||||| Sbjct 41600 GCAGCGTCTGATTTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTATAA 41541 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || ||||||||| | || |||| || ||| Sbjct 41540 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTGCGAGGTGGC 41492 >seq393 Length=578971 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 169107 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 169048 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 169047 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 168988 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || ||||||||||| ||| | | | || ||||| ||| Sbjct 168987 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 168928 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || ||||| || ||| |||| Sbjct 168927 ATCCAGAAAGATTCGACCCTGCACCTGGT 168899 >seq5560 Length=149305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || | || || ||||| || ||| || | Sbjct 93195 ATGCAGATTTTCTTGAAGACCCTGACAGGGATGGGCATCACTCTCGAGGTTGAACCCTCG 93254 Query 24764 GACACAGTAGAAACG-GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| ||||| |||| ||| ||||| |||||||| ||||| || || Sbjct 93255 GATGCAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGACCA 93314 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 93315 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 93374 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||||||| || || || || |||| Sbjct 93375 CATTCAAAAGGAGTCTACTCTTCATCTTG 93403 >seq25372 Length=10183 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || | || || || || || || || || || || ||| || | Sbjct 9067 GATGCAGATTTTTGTGAAGATCCTGACAGGGAAGACCATCACTCTGGAGGTCGAACCCTC 9126 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||||| ||||| ||||||||||| || || | ||| ||| | | || Sbjct 9127 GGATACAACAGAAAATGTAAACGCCAAGATCCAAGATAAGGATGTAATTCCTTCTAACCA 9186 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||| ||||| || || || ||||| ||| | | |||| || || || Sbjct 9187 GCAAAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 9246 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 || ||||||||| || || || || | ||||| || Sbjct 9247 CAGTCAAAAGGAGTCCACTCTTCATCTTCTGTTGAGA 9283 >seq3805 Length=195799 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| || || || || ||| | || || || || | || || ||| ||| Sbjct 70796 ATGCAGATCTTCATGAAGACCCTGACCTGCAAGACCATCACCCCGGAGGTGGAACCCAGT 70855 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || |||||||| || || || || || Sbjct 70856 GACACCG-AGAA--TGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAG 70912 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||| || |||||| |||| ||| | | | || ||||| ||| Sbjct 70913 CAGAGGCTCCTCTTTGCAGGCAAACAGATGGAAGATGGCTGCACTCTTTCTGATTACAAC 70972 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || ||||| || ||| |||| Sbjct 70973 ATCCAGAAAGAGTCGACCCTGCACCTGGT 71001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449575906344840