Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq17015 141 9e-29
seq234 98.7 9e-16
seq5371 89.7 5e-13
>seq17015
Length=38625
Score = 141 bits (156), Expect = 9e-29
Identities = 673/1063 (63%), Gaps = 40/1063 (4%)
Strand=Plus/Plus
Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264
||||||| | ||| || || ||||| ||| | ||| |||| | |||||| | || |
Sbjct 22625 ATGCCTTCTATGTTGCGGACCTGGGAGACATTCTAAAGAAACATCTGAGATGGTTTAAAG 22684
Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGAGTCCTCA 20324
|| | ||| |||| || ||||| || | || | ||| | | | | |
Sbjct 22685 CTCTTCCTCGGGTCACCCCCTTTTATGCACTCAAATGCAGTAACAGCAGAACCATAGTGA 22744
Query 20325 AGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTAC 20384
|||||||||||||| | || || |||||||||||||| || || || |||||
Sbjct 22745 AGACCCTAGCTGCCATAGGGACAGGATTTGACTGTGCCAGCAACACTGAAATCCAGTTGG 22804
Query 20385 TGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGT-AAGCAGCCT 20443
||| | ||| || || | | || ||||| | | | ||||||| | || ||
Sbjct 22805 CGCAGAGTCTCGGGGTGCCTCCTGAGAGGATTTTCTACACAAATCCTTATTAAACAAGTG 22864
Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503
| || || | || || || | | |||||| | ||||||||||||||||||||
Sbjct 22865 TATCAGATTAAATACGCTGCCAATAATGGAGTCCAGACGATGACTTTTGATAGTGAAGTT 22924
Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563
||| | | ||| ||| | || | | || ||| |||| || ||||| |
Sbjct 22925 GAGTTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATTGCCACG 22984
Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623
||||| || || ||| | | || |||||||| ||||| || | | || |||||
Sbjct 22985 GATGATTCCAAAGCAGTCTATAGCCTCAGTGTCAAATTTGGTGCCACACTCAAAACCAGC 23044
Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683
| || || ||| ||| ||| | ||| | || || || || |||||||||||
Sbjct 23045 AGGCTTCTTCTGGAACGGGCGAAAGAGCTAGCTATTGATGTCATTGGTCTCAGCTTCCAC 23104
Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743
||||| ||||| | | ||| || | | | || | ||||| |||| ||| | |
Sbjct 23105 GTGGGAAGTGGTTCTACTGATCCAGGGACCTTCATGCAGGCCATCTCTGATGCCCGCTGT 23164
Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801
| |||||| | || ||||| | || || ||||||| || | || |||||||| |
Sbjct 23165 GTCTTTGACAT--GCGAGCTGAGGTTGGTTTCAACATGTATCTGCTTGACATTGGTGGTG 23222
Query 20802 GCTTTCCCGGGATCAATGAGATTGAGCCAACTTTTGAGGACATTGCAGAAGTCATTAACG 20861
||||||| || | | || | ||| | ||||| || || | || || |||
Sbjct 23223 GCTTTCCTGGATCCGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTAATCAACC 23282
Query 20862 CGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTGGCA 20921
| || ||||| | | |||||||| || | ||| ||| || | ||| || || |
Sbjct 23283 CAGCGTTGGACAAGTATTTTCCATTAGACTCTGGAGTGAGAATCATAGCTGAGCCAGGAA 23342
Query 20922 GGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTGTGT 20979
| ||||| | | | || || | || |||| | | | | ||||| ||||| || |
Sbjct 23343 GATACTATGTTGCATCAGCTTTCACGCTAGCAATTAATATCATTGCCAAAAAACTCGTAT 23402
Query 20980 TGAAG--ACA------CTC-----CTGGAGA---------TAAAAAG---TTTATGTATT 21014
| ||| ||| ||| || ||| | || || ||||||||||
Sbjct 23403 TAAAGGAACAGACAGGCTCTGATGATGAAGATGAGTTGAGTGAACAGACATTTATGTATT 23462
Query 21015 ATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTCCTA 21074
|||| |||||||| || ||||| || |||||||| | || | ||||| | |
Sbjct 23463 ATGTGAATGATGGAGTATATGGATCATTCAACTGCATCCTCTTCGATCATGCACACGTGA 23522
Query 21075 TGCCTATGCTGCTTAAAGAA-AAACGCCTTGAAGACAAAGACTATGTTTC---TAGCATT 21130
|||| | |||| |||| | || | ||| || | ||| ||| ||||||
Sbjct 23523 AGCCTCTTCTGC----AGAAGAGACCCAAACCAGATAAGAAGTATTATTCATGTAGCATC 23578
Query 21131 TGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTT 21190
||||| || | || |||||| | ||||||| |||| | || | | | |||| || |
Sbjct 23579 TGGGGACCGACATGTGATGGCCTGGATTGCACTGTTGAACGCTATAACTTGCCCAAGATG 23638
Query 21191 CAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233
|| ||||| || ||| | | |||||||||||||| |||||||
Sbjct 23639 CATGTGGGTGATTGGATGTTCTTTGAAAACATGGGTGCTTACA 23681
>seq234
Length=686097
Score = 98.7 bits (108), Expect = 9e-16
Identities = 131/177 (74%), Gaps = 4/177 (2%)
Strand=Plus/Minus
Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181
|| ||||| ||||| || | ||| |||||| | ||| |||||||| |||| ||| | ||
Sbjct 57423 TCCAGCATCTGGGGACCGACCTGTGATGGCCTGGATCGCATTGTTGAGCGCTGTAACTTG 57364
Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241
|| ||| | || |||||||| ||| | | |||||||||||||| ||||||| || |
Sbjct 57363 CCCGAGATGCATGTGGGCGATTGGATGCTCTTTGAAAACATGGGTGCTTACA-CTGTCGC 57305
Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296
||| |||| || || || || || ||| || | || | | ||||||| || ||||
Sbjct 57304 TGCTGCTTCCACTTTCAATGGATT-CCAGAGACCGACCATCTACTATGTGATGTCAG 57249
>seq5371
Length=153260
Score = 89.7 bits (98), Expect = 5e-13
Identities = 198/297 (67%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264
||| ||| | ||| ||| || ||||| ||||| ||| |||| | |||||| | || |
Sbjct 146993 ATGTCTTCTATGTTGCAGACCTGGGAGACATTGTAAAGAAACATCTAAGATGGTTTAAAG 147052
Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGAGTCCTCA 20324
|| | ||| || || || ||||| || || || | | | | | | | |
Sbjct 147053 CTCTTCCTTGAGGCACCCCCTTTTATGCAGTCAAATGCAATTATAGCAGAACCATAGTGA 147112
Query 20325 AGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTAC 20384
||||| || ||||| || | || |||||||||||||| ||| || || |||||
Sbjct 147113 AGACCATACCTGCCATTTGGAAGGGATTTGACTGTGCCAGCAAGACTGAAATCCAGTTGG 147172
Query 20385 TGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCTT 20444
|||| | ||| | || | |||| ||||| | | ||| ||||||||||| | |
Sbjct 147173 TGCAGAGTCTCAGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAATAAGTGT 147232
Query 20445 CGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAG 20501
| | || | ||||| || | | |||||| | |||||||||||||||||||||
Sbjct 147233 CTCTGATTAAATATGCTGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAG 147289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463214147513040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |