Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq17015 141 9e-29 seq234 98.7 9e-16 seq5371 89.7 5e-13 >seq17015 Length=38625 Score = 141 bits (156), Expect = 9e-29 Identities = 673/1063 (63%), Gaps = 40/1063 (4%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || ||||| ||| | ||| |||| | |||||| | || | Sbjct 22625 ATGCCTTCTATGTTGCGGACCTGGGAGACATTCTAAAGAAACATCTGAGATGGTTTAAAG 22684 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGAGTCCTCA 20324 || | ||| |||| || ||||| || | || | ||| | | | | | Sbjct 22685 CTCTTCCTCGGGTCACCCCCTTTTATGCACTCAAATGCAGTAACAGCAGAACCATAGTGA 22744 Query 20325 AGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTAC 20384 |||||||||||||| | || || |||||||||||||| || || || ||||| Sbjct 22745 AGACCCTAGCTGCCATAGGGACAGGATTTGACTGTGCCAGCAACACTGAAATCCAGTTGG 22804 Query 20385 TGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGT-AAGCAGCCT 20443 ||| | ||| || || | | || ||||| | | | ||||||| | || || Sbjct 22805 CGCAGAGTCTCGGGGTGCCTCCTGAGAGGATTTTCTACACAAATCCTTATTAAACAAGTG 22864 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 | || || | || || || | | |||||| | |||||||||||||||||||| Sbjct 22865 TATCAGATTAAATACGCTGCCAATAATGGAGTCCAGACGATGACTTTTGATAGTGAAGTT 22924 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | | || ||| |||| || ||||| | Sbjct 22925 GAGTTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATTGCCACG 22984 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || |||||||| ||||| || | | || ||||| Sbjct 22985 GATGATTCCAAAGCAGTCTATAGCCTCAGTGTCAAATTTGGTGCCACACTCAAAACCAGC 23044 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || || ||| ||| ||| | ||| | || || || || ||||||||||| Sbjct 23045 AGGCTTCTTCTGGAACGGGCGAAAGAGCTAGCTATTGATGTCATTGGTCTCAGCTTCCAC 23104 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 ||||| ||||| | | ||| || | | | || | ||||| |||| ||| | | Sbjct 23105 GTGGGAAGTGGTTCTACTGATCCAGGGACCTTCATGCAGGCCATCTCTGATGCCCGCTGT 23164 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | |||||| | || ||||| | || || ||||||| || | || |||||||| | Sbjct 23165 GTCTTTGACAT--GCGAGCTGAGGTTGGTTTCAACATGTATCTGCTTGACATTGGTGGTG 23222 Query 20802 GCTTTCCCGGGATCAATGAGATTGAGCCAACTTTTGAGGACATTGCAGAAGTCATTAACG 20861 ||||||| || | | || | ||| | ||||| || || | || || ||| Sbjct 23223 GCTTTCCTGGATCCGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTAATCAACC 23282 Query 20862 CGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTGGCA 20921 | || ||||| | | |||||||| || | ||| ||| || | ||| || || | Sbjct 23283 CAGCGTTGGACAAGTATTTTCCATTAGACTCTGGAGTGAGAATCATAGCTGAGCCAGGAA 23342 Query 20922 GGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTGTGT 20979 | ||||| | | | || || | || |||| | | | | ||||| ||||| || | Sbjct 23343 GATACTATGTTGCATCAGCTTTCACGCTAGCAATTAATATCATTGCCAAAAAACTCGTAT 23402 Query 20980 TGAAG--ACA------CTC-----CTGGAGA---------TAAAAAG---TTTATGTATT 21014 | ||| ||| ||| || ||| | || || |||||||||| Sbjct 23403 TAAAGGAACAGACAGGCTCTGATGATGAAGATGAGTTGAGTGAACAGACATTTATGTATT 23462 Query 21015 ATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTCCTA 21074 |||| |||||||| || ||||| || |||||||| | || | ||||| | | Sbjct 23463 ATGTGAATGATGGAGTATATGGATCATTCAACTGCATCCTCTTCGATCATGCACACGTGA 23522 Query 21075 TGCCTATGCTGCTTAAAGAA-AAACGCCTTGAAGACAAAGACTATGTTTC---TAGCATT 21130 |||| | |||| |||| | || | ||| || | ||| ||| |||||| Sbjct 23523 AGCCTCTTCTGC----AGAAGAGACCCAAACCAGATAAGAAGTATTATTCATGTAGCATC 23578 Query 21131 TGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTT 21190 ||||| || | || |||||| | ||||||| |||| | || | | | |||| || | Sbjct 23579 TGGGGACCGACATGTGATGGCCTGGATTGCACTGTTGAACGCTATAACTTGCCCAAGATG 23638 Query 21191 CAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || ||||| || ||| | | |||||||||||||| ||||||| Sbjct 23639 CATGTGGGTGATTGGATGTTCTTTGAAAACATGGGTGCTTACA 23681 >seq234 Length=686097 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/177 (74%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | ||| |||||| | ||| |||||||| |||| ||| | || Sbjct 57423 TCCAGCATCTGGGGACCGACCTGTGATGGCCTGGATCGCATTGTTGAGCGCTGTAACTTG 57364 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || ||| | || |||||||| ||| | | |||||||||||||| ||||||| || | Sbjct 57363 CCCGAGATGCATGTGGGCGATTGGATGCTCTTTGAAAACATGGGTGCTTACA-CTGTCGC 57305 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| |||| || || || || || ||| || | || | | ||||||| || |||| Sbjct 57304 TGCTGCTTCCACTTTCAATGGATT-CCAGAGACCGACCATCTACTATGTGATGTCAG 57249 >seq5371 Length=153260 Score = 89.7 bits (98), Expect = 5e-13 Identities = 198/297 (67%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||| ||| | ||| ||| || ||||| ||||| ||| |||| | |||||| | || | Sbjct 146993 ATGTCTTCTATGTTGCAGACCTGGGAGACATTGTAAAGAAACATCTAAGATGGTTTAAAG 147052 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGAGTCCTCA 20324 || | ||| || || || ||||| || || || | | | | | | | | Sbjct 147053 CTCTTCCTTGAGGCACCCCCTTTTATGCAGTCAAATGCAATTATAGCAGAACCATAGTGA 147112 Query 20325 AGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTAC 20384 ||||| || ||||| || | || |||||||||||||| ||| || || ||||| Sbjct 147113 AGACCATACCTGCCATTTGGAAGGGATTTGACTGTGCCAGCAAGACTGAAATCCAGTTGG 147172 Query 20385 TGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCTT 20444 |||| | ||| | || | |||| ||||| | | ||| ||||||||||| | | Sbjct 147173 TGCAGAGTCTCAGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAATAAGTGT 147232 Query 20445 CGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAG 20501 | | || | ||||| || | | |||||| | ||||||||||||||||||||| Sbjct 147233 CTCTGATTAAATATGCTGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAG 147289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463214147513040