Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq130 277 2e-69 >seq130 Length=835693 Score = 277 bits (306), Expect = 2e-69 Identities = 499/719 (69%), Gaps = 54/719 (8%) Strand=Plus/Plus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 ||||||| ||||||||||||||||||| ||||||| |||| || | | |||||||| Sbjct 804843 CCACAGCCCTAGCTTCTGGTCTGAAAA-GAGTAGGCTTCTTCTGGGGGCAGTGGAAGGCA 804901 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGTT 1190 ||||||||||| ||||| |||||||||||| | |||||||||| || || | || |||| Sbjct 804902 TTTTAAAGAAATGGCTTGGAAAAAAAATCTCGAGGGCACTTACGTAGTCATTCAAGAGTT 804961 Query 1191 TTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGGTAG----T 1246 | ||| ||| || ||| ||| |||||| |||| |||| | || || ||| | Sbjct 804962 TCTCAAACGAGGACCGTAATTCCTTGATTATAGCTTGTTGTTTATCTGGTCCTAGCATAT 805021 Query 1247 GGATGGCCG--TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCC 1304 | |||| |||||||| ||||||||||| |||||||||||||||||||||||| || Sbjct 805022 AGGGTGCCGTATGGGAGGACAGCAAGGCTCCTAAACAGCAGAGCAGGAACAGGGCAAACC 805081 Query 1305 CTGAAGATTTTGTAAAAATAGAGTAATGCCCACACACCCCCACCTGCCCCATACCTTAAC 1364 | |||| || | ||| || || || || | || ||| || ||| | | Sbjct 805082 TGGCAGATCCTGGAGAAAGAGGGTGAT--CCCGGGAGGAGCAGAGGCCGCACACCCCAGC 805139 Query 1365 CTG--CCCAAGCTTTCACCACCGAAGCTG-TGCCG------GACTGAGCCCCATCCAGTC 1415 | | ||| |||| ||| | | |||| || || | ||||||||| ||||| | Sbjct 805140 CCGCCCCCCGGCTTCAACCGCTCAGGCTGTTGTCGAGCAGTGGCTGAGCCCC-TCCAGCC 805198 Query 1416 TTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGACCTAT 1475 || |||| ||||| | || || ||| | ||| | ||| | | ||| Sbjct 805199 TTCCTCTCTGTCTGGTGAGACCTGACTGTGCCCCGC---------GGCCGCGGCACCCCA 805249 Query 1476 CGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAACAGCTG 1535 | |||||| | |||| || || || | ||||||||| || |||| ||||||||| Sbjct 805250 TGGTACCTGCGTGGGAGACCATGGC--GGGAGAGCGAG---GCTGCTTCAGCAACAGCTC 805304 Query 1536 CTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAG 1595 || ||| |||||||||||| | | || ||| | |||||||||||| | | | || Sbjct 805305 CTGGAGCCAGATGTGCTCGCCGTGGTCTTCAGGAGC--TATATAAAGGGCCAATGGCGAG 805362 Query 1596 GAGGAG---CACTAAAAGTACCGCCCACGGTAAAGTCATTACT-----------CAGAAA 1641 || ||| || | | || || |||| || ||| |||||||| |||||| Sbjct 805363 GAAGAGGGACAATCACTGTCCCACCCATGGCAAAATCATTACTCAGCTTTTTCCCAGAAA 805422 Query 1642 ACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAA---TGA 1697 ||| ||||||| | ||||| | | ||| | |||||| |||| |||||||| ||| Sbjct 805423 ACACTTTCAAAAGTCTGCCACCCAAGGCTGGGTGAAAGCAGGGCTGGAAGGAAATGCTGA 805482 Query 1698 AGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGGGCACCCACA 1756 |||||||| ||| |||||||| || ||| || | || ||||||| | ||||| |||| Sbjct 805483 GGTTACCCTCAAGGTGGGCAGACGCCTGATTCAGTACAGATACACA-CAGGCACACACA 805540 Score = 168 bits (186), Expect = 6e-37 Identities = 338/497 (68%), Gaps = 43/497 (9%) Strand=Plus/Plus Query 287 AACAACTTACAGCAGAATTCTCGTACACAGAGGGCACTAATCTT-----------AAGGC 335 || |||| |||||||||||||| || || | |||| || || ||||| Sbjct 803174 AATAACTCACAGCAGAATTCTCACACTTAGCTGTCACTCATTTTTTTTTTTTTTTAAGGC 803233 Query 336 TCTTTGCATTCCTGCCATTC-AAAAGGAACAGGGTCAACCACATGGTCTTCAGTGACCTT 394 | |||||| ||||||||| ||||||| |||| ||||||| ||| || | |||||| Sbjct 803234 TTCATGCATTTCTGCCATTCCAAAAGGACCAGGTTCAACCAGATGCCTTTAAATGACCTA 803293 Query 395 CCAGGCTTCAGTGCCCACTAATTT----------CAGGCACTTTGAAAACATTTCTAAAA 444 | |||| ||||| | | |||| |||||||| ||||||| ||| ||||| Sbjct 803294 CTGGGCTCCAGTGTTTAATGATTTAAACAGATTTCAGGCACTCTGAAAACTTTTTTAAAA 803353 Query 445 CACACTGTATGAACACtttttt---ttGATAGCTGTCTGTAGGCATAGAAA------TGT 495 | || ||||| ||||||| || | |||| |||||||||| ||||| | | Sbjct 803354 TAGACACGATGAA-GCTTTTTTACATTTAAAGCTCTCTGTAGGCACAGAAACCTTTGTTT 803412 Query 496 CTGGTGCGCGTTGCAATTCAAGTTTTTTGAGATGGTCCATGACATCAGTAAAACT--ATT 553 ||||| | || | ||||| ||||| |||||||||| |||| || | |||| | | Sbjct 803413 CTGGTTCATGTCGAAATTCGAGTTTACTGAGATGGTCTGTGACGGCA--ACAACTTGAGT 803470 Query 554 TGTGTCATTAAAAAATGATTTGATGGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGAT 613 | || || ||| ||| |||||| ||||| ||||||| | ||||||| | || Sbjct 803471 TTCGTTATGGAAAGATGGTTTGATCGCTCTGCGGTAAGGCAAG-TGGCTGAGCAGTCCTC 803529 Query 614 GTTGTGTGGTGGCTGGGGGCTCACAGAAAAGCACTGCATGCGGCACGTGCATGATTTTAC 673 | ||| ||| |||||||| ||| || || || |||| || || || | || Sbjct 803530 GCTGTATGGCAGCTGGGGGTTCAGAGCGAAATACGGCATCTGGTACTGGCTGGGTTCCGG 803589 Query 674 TAATCCCTTATTCTCTTTCTGCTTCTGTG---GAAGGAGAGGAAATGGGTGAGCATTAGT 730 | ||| |||||| ||||| ||||| |||||| |||| ||||||||| ||||| Sbjct 803590 CACTCC---TCTCTCTTCCTGCTGCTGTGTAACAAGGAGGGGAAGTGGGTGAGCGTTAGT 803646 Query 731 GTTGTAAAGCAGTCAGA 747 ||| ||| ||| |||| Sbjct 803647 TTTGCAAAACAGCCAGA 803663 Score = 96.9 bits (106), Expect = 3e-15 Identities = 90/114 (79%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 166 CCACACACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTT 225 || || |||| | | |||||| ||| ||||||||||| ||| |||||||||||| ||| Sbjct 802869 CCCCAAACAAAACGCGAAACAGAGTATGAGAAAAATTCAATATCATTTATTAAATAGTTT 802928 Query 226 TCAAGGGCTTCTTTAAGAAGCATTAACAATCTAACAACATTTTATAAATAACAA 279 |||||||| ||| ||| |||||||||||||| | || | ||||||| ||| Sbjct 802929 CCAAGGGCTCCTTCAAGGAGCATTAACAATCTCA----ATATGATAAATATCAA 802978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438246413154000