Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq130 277 2e-69
>seq130
Length=835693
Score = 277 bits (306), Expect = 2e-69
Identities = 499/719 (69%), Gaps = 54/719 (8%)
Strand=Plus/Plus
Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130
||||||| ||||||||||||||||||| ||||||| |||| || | | ||||||||
Sbjct 804843 CCACAGCCCTAGCTTCTGGTCTGAAAA-GAGTAGGCTTCTTCTGGGGGCAGTGGAAGGCA 804901
Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGTT 1190
||||||||||| ||||| |||||||||||| | |||||||||| || || | || ||||
Sbjct 804902 TTTTAAAGAAATGGCTTGGAAAAAAAATCTCGAGGGCACTTACGTAGTCATTCAAGAGTT 804961
Query 1191 TTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGGTAG----T 1246
| ||| ||| || ||| ||| |||||| |||| |||| | || || ||| |
Sbjct 804962 TCTCAAACGAGGACCGTAATTCCTTGATTATAGCTTGTTGTTTATCTGGTCCTAGCATAT 805021
Query 1247 GGATGGCCG--TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCC 1304
| |||| |||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 805022 AGGGTGCCGTATGGGAGGACAGCAAGGCTCCTAAACAGCAGAGCAGGAACAGGGCAAACC 805081
Query 1305 CTGAAGATTTTGTAAAAATAGAGTAATGCCCACACACCCCCACCTGCCCCATACCTTAAC 1364
| |||| || | ||| || || || || | || ||| || ||| | |
Sbjct 805082 TGGCAGATCCTGGAGAAAGAGGGTGAT--CCCGGGAGGAGCAGAGGCCGCACACCCCAGC 805139
Query 1365 CTG--CCCAAGCTTTCACCACCGAAGCTG-TGCCG------GACTGAGCCCCATCCAGTC 1415
| | ||| |||| ||| | | |||| || || | ||||||||| ||||| |
Sbjct 805140 CCGCCCCCCGGCTTCAACCGCTCAGGCTGTTGTCGAGCAGTGGCTGAGCCCC-TCCAGCC 805198
Query 1416 TTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGACCTAT 1475
|| |||| ||||| | || || ||| | ||| | ||| | | |||
Sbjct 805199 TTCCTCTCTGTCTGGTGAGACCTGACTGTGCCCCGC---------GGCCGCGGCACCCCA 805249
Query 1476 CGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAACAGCTG 1535
| |||||| | |||| || || || | ||||||||| || |||| |||||||||
Sbjct 805250 TGGTACCTGCGTGGGAGACCATGGC--GGGAGAGCGAG---GCTGCTTCAGCAACAGCTC 805304
Query 1536 CTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAG 1595
|| ||| |||||||||||| | | || ||| | |||||||||||| | | | ||
Sbjct 805305 CTGGAGCCAGATGTGCTCGCCGTGGTCTTCAGGAGC--TATATAAAGGGCCAATGGCGAG 805362
Query 1596 GAGGAG---CACTAAAAGTACCGCCCACGGTAAAGTCATTACT-----------CAGAAA 1641
|| ||| || | | || || |||| || ||| |||||||| ||||||
Sbjct 805363 GAAGAGGGACAATCACTGTCCCACCCATGGCAAAATCATTACTCAGCTTTTTCCCAGAAA 805422
Query 1642 ACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAA---TGA 1697
||| ||||||| | ||||| | | ||| | |||||| |||| |||||||| |||
Sbjct 805423 ACACTTTCAAAAGTCTGCCACCCAAGGCTGGGTGAAAGCAGGGCTGGAAGGAAATGCTGA 805482
Query 1698 AGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGGGCACCCACA 1756
|||||||| ||| |||||||| || ||| || | || ||||||| | ||||| ||||
Sbjct 805483 GGTTACCCTCAAGGTGGGCAGACGCCTGATTCAGTACAGATACACA-CAGGCACACACA 805540
Score = 168 bits (186), Expect = 6e-37
Identities = 338/497 (68%), Gaps = 43/497 (9%)
Strand=Plus/Plus
Query 287 AACAACTTACAGCAGAATTCTCGTACACAGAGGGCACTAATCTT-----------AAGGC 335
|| |||| |||||||||||||| || || | |||| || || |||||
Sbjct 803174 AATAACTCACAGCAGAATTCTCACACTTAGCTGTCACTCATTTTTTTTTTTTTTTAAGGC 803233
Query 336 TCTTTGCATTCCTGCCATTC-AAAAGGAACAGGGTCAACCACATGGTCTTCAGTGACCTT 394
| |||||| ||||||||| ||||||| |||| ||||||| ||| || | ||||||
Sbjct 803234 TTCATGCATTTCTGCCATTCCAAAAGGACCAGGTTCAACCAGATGCCTTTAAATGACCTA 803293
Query 395 CCAGGCTTCAGTGCCCACTAATTT----------CAGGCACTTTGAAAACATTTCTAAAA 444
| |||| ||||| | | |||| |||||||| ||||||| ||| |||||
Sbjct 803294 CTGGGCTCCAGTGTTTAATGATTTAAACAGATTTCAGGCACTCTGAAAACTTTTTTAAAA 803353
Query 445 CACACTGTATGAACACtttttt---ttGATAGCTGTCTGTAGGCATAGAAA------TGT 495
| || ||||| ||||||| || | |||| |||||||||| ||||| | |
Sbjct 803354 TAGACACGATGAA-GCTTTTTTACATTTAAAGCTCTCTGTAGGCACAGAAACCTTTGTTT 803412
Query 496 CTGGTGCGCGTTGCAATTCAAGTTTTTTGAGATGGTCCATGACATCAGTAAAACT--ATT 553
||||| | || | ||||| ||||| |||||||||| |||| || | |||| | |
Sbjct 803413 CTGGTTCATGTCGAAATTCGAGTTTACTGAGATGGTCTGTGACGGCA--ACAACTTGAGT 803470
Query 554 TGTGTCATTAAAAAATGATTTGATGGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGAT 613
| || || ||| ||| |||||| ||||| ||||||| | ||||||| | ||
Sbjct 803471 TTCGTTATGGAAAGATGGTTTGATCGCTCTGCGGTAAGGCAAG-TGGCTGAGCAGTCCTC 803529
Query 614 GTTGTGTGGTGGCTGGGGGCTCACAGAAAAGCACTGCATGCGGCACGTGCATGATTTTAC 673
| ||| ||| |||||||| ||| || || || |||| || || || | ||
Sbjct 803530 GCTGTATGGCAGCTGGGGGTTCAGAGCGAAATACGGCATCTGGTACTGGCTGGGTTCCGG 803589
Query 674 TAATCCCTTATTCTCTTTCTGCTTCTGTG---GAAGGAGAGGAAATGGGTGAGCATTAGT 730
| ||| |||||| ||||| ||||| |||||| |||| ||||||||| |||||
Sbjct 803590 CACTCC---TCTCTCTTCCTGCTGCTGTGTAACAAGGAGGGGAAGTGGGTGAGCGTTAGT 803646
Query 731 GTTGTAAAGCAGTCAGA 747
||| ||| ||| ||||
Sbjct 803647 TTTGCAAAACAGCCAGA 803663
Score = 96.9 bits (106), Expect = 3e-15
Identities = 90/114 (79%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 166 CCACACACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTT 225
|| || |||| | | |||||| ||| ||||||||||| ||| |||||||||||| |||
Sbjct 802869 CCCCAAACAAAACGCGAAACAGAGTATGAGAAAAATTCAATATCATTTATTAAATAGTTT 802928
Query 226 TCAAGGGCTTCTTTAAGAAGCATTAACAATCTAACAACATTTTATAAATAACAA 279
|||||||| ||| ||| |||||||||||||| | || | ||||||| |||
Sbjct 802929 CCAAGGGCTCCTTCAAGGAGCATTAACAATCTCA----ATATGATAAATATCAA 802978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438246413154000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |