Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1014 136 4e-27 seq393 127 2e-24 seq2543 125 7e-24 seq18093 122 8e-23 seq3456 113 4e-20 seq3805 98.7 1e-15 seq3119 96.9 3e-15 seq561 86.0 6e-12 seq17051 84.2 2e-11 seq10582 82.4 7e-11 >seq1014 Length=401283 Score = 136 bits (150), Expect = 4e-27 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| ||||| || || || ||| | | | ||||| || Sbjct 41514 AAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTGCGGCCA-TCCTCCAG 41572 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||||||| |||| || ||||||||||| || |||||||| |||||||| ||| Sbjct 41573 CTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT 41632 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||||| ||||| ||||||| || || | |||| ||| |||| Sbjct 41633 -TTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGAGTGATGGTCTTGC 41691 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || || || |||||||| Sbjct 41692 CCGTCAAGGTCTTCACTAAGATCTGCAT 41719 >seq393 Length=578971 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || |||||||| || |||||||| | ||| | | | || || ||||| |||| Sbjct 168910 GGTCGAATCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 168968 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||||||||| || |||||| || Sbjct 168969 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCT 169028 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 169029 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 169088 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 169089 TCTTCACAAAGATCTGCAT 169107 >seq2543 Length=251032 Score = 125 bits (138), Expect = 7e-24 Identities = 146/196 (74%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || |||||||| || ||| | ||| || ||||| ||||| Sbjct 121612 GGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCCAGCTGTTTGCC 121671 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| |||||||||||| |||||||||||||| || |||||| ||| Sbjct 121672 TGCAAAGATGAGCCTCTGCTGGTCGGG-GGGATGCCTTCCTTATCCTGGATCTTGGCCTT 121730 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | |||| ||| ||||| ||||| || Sbjct 121731 CACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGT 121790 Query 133643 TTTTACGAAAATCTGC 133658 || |||| |||||| Sbjct 121791 CTTCCCGAAGATCTGC 121806 >seq18093 Length=33488 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| |||| Sbjct 2829 GGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCA-TCTTCCAGCTGTTTGC 2887 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || ||||||||||| || || |||||| || Sbjct 2888 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCT 2947 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| | Sbjct 2948 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGG 3007 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 3008 TCTTCACGAAGATCTGCAT 3026 >seq3456 Length=207676 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||| ||||||| || | |||||| | ||| | || || ||||| ||||| Sbjct 50576 GTTGACCCTTTCTGGATGTCGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCT 50635 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||| | || |||||||||||||| || |||||| ||| Sbjct 50636 GCAAAGATAAGCCTCTGCTGGACAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 50695 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| ||| |||||| || | ||||| ||| ||||||||||| || Sbjct 50696 ACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 50755 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 50756 TTCACGAAGATCTGCAT 50772 >seq3805 Length=195799 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || |||||||| | ||| | || || | ||| ||||| Sbjct 70990 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCATCTGTTTGCC 70931 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | | ||||| ||||||||| || ||||||||||| || || |||||| ||| Sbjct 70930 TGCAAAGAGGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 70871 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||| ||||| || ||||| ||| |||| |||||| || Sbjct 70870 CACATTCT---CGGTGTCACTGGGTTCCACCTCCGGGGTGATGGTCTTGCAGGTCAGGGT 70814 Query 133643 TTTTACGAAAATCTGCAT 133660 || | ||| |||||||| Sbjct 70813 CTTCATGAAGATCTGCAT 70796 >seq3119 Length=221544 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||| ||| | ||| | | | || || || ||||||| Sbjct 196871 GGTCGACTCTTTCTGGATGTTGTGATCAGAAAGAGTGTGGCCA-TCTTCCAGATGCTTGC 196813 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||| |||||| ||||||||||||| || |||||| || Sbjct 196812 CTGCAAAGATGAGCCTCTGCTGTTCGGGA-GGATGCCTTCCTTATCCTGGATCTTGGCCT 196754 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | | | |||| ||||||| || || | ||||| ||| |||| ||||| | Sbjct 196753 TCACATTCCTGATGATGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCTGGTCAAGG 196694 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 196693 TCTTCACGAAGATTTGCAT 196675 >seq561 Length=508305 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || || | |||||||| ||||| || ||||||||| Sbjct 125824 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTG 125765 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | || ||| ||| || || |||| |||| | Sbjct 125764 TCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACCTCGAGAGTGATG 125705 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| || || |||||||||||||| Sbjct 125704 GTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 125670 >seq17051 Length=38469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| || || || | | | || || || |||||||| Sbjct 11443 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 11385 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || | ||| ||||| |||| || ||||||||||| |||||| ||| Sbjct 11384 AGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTT 11325 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | ||| || || |||| |||| ||| || || ||||| || Sbjct 11324 TACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGT 11265 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 11264 CTTCACGAAAATCTGCAT 11247 >seq10582 Length=81843 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || || | |||||||| ||||| || ||||||||| Sbjct 38588 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTG 38647 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || || ||| ||| | | || | || || | ||| || || |||| |||| | Sbjct 38648 TCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATG 38707 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| || || |||||||||||||| Sbjct 38708 GTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 38742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483075135999720