Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq6451 286 4e-72 seq8405 203 4e-47 seq8580 123 3e-23 seq16711 82.4 9e-11 >seq6451 Length=132943 Score = 286 bits (316), Expect = 4e-72 Identities = 666/1001 (67%), Gaps = 9/1001 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| |||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 90492 CCAGGGCCTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCA 90551 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||||||||| ||||||| ||| ||| | | || ||||| || | || |||| Sbjct 90552 TGTCGAACTTGTTGGCGAACAAGTGGTGCACGCGC---AACATCCAGTTCAAGTCACCCG 90608 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || |||||||| |||||||| ||||||||||||||||| || |||| || | Sbjct 90609 CTCCGAAAACACACACGGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 90668 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || ||||| | || || |||||||||| Sbjct 90669 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCAATCGCGTGCATGTCGG 90728 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||||||||| | | | | || | || || || | || | ||||| | || Sbjct 90729 ACATGTCGTACTTATGGCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAG 90788 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | ||||| || || || || || || | ||||||||| |||| | Sbjct 90789 TGGCCCAGAGATACTCGTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTA 90848 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | || | || || || ||| | || | ||| || || || | Sbjct 90849 TTTTTTCATTCTCGAGCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGC 90908 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | |||||| | |||||| ||| |||| | | Sbjct 90909 CTGAAAACAGAGGTGTTTCAAGAGGAGGATGTATTTTGTCGGTCCCCATGTTTGTCAGCT 90968 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | ||||| | | ||| ||||||| | | ||| ||| | | | Sbjct 90969 TTCCATTCACGACTGCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCT 91028 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| ||| || | ||| |||| | || || || || |||| Sbjct 91029 CCGTTTCTAGGTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGG 91088 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | ||||||||||| || | || ||||| | || | | || Sbjct 91089 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTC 91148 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| || || ||||| | Sbjct 91149 GGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAA 91208 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA--- 162835 | ||||||| | | |||| || |||||||| |||||| || | || || |||| Sbjct 91209 CACTCTCCAGCTGACTGGCCACGAAGACATTACTGAAACAGGATGCAATGCCAATCACTG 91268 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 |||||| || | || || | ||| |||| ||||| | ||| || | |||||||| Sbjct 91269 CGGCCAAAAAGGA-TTC--CTCTGATTTTGTATCCACGTGAATGCAATAGAAATTCTGAG 91325 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | || ||||||||||| | || || | ||| || || || || || ||||| | || Sbjct 91326 GCATATAAATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAG 91385 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || ||||| ||||| || ||| || | || || || ||||| | Sbjct 91386 AATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGCT 91445 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | || | ||||| || |||||||| | |||| Sbjct 91446 TCTTGATGAAAGAAGCACAATCACTGGTCATGTTTATGTAG 91486 >seq8405 Length=104879 Score = 203 bits (224), Expect = 4e-47 Identities = 238/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || || || ||||| ||||| || | | Sbjct 50048 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 50107 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| || |||| |||||| ||||| || || | || || || ||| Sbjct 50108 ACTTGTAACACCCTTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCGTGA 50167 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 50168 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGT 50227 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| ||| || ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 50228 TCTGGCTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 50287 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | |||||| | | |||| ||||||||||||||||||||||||||||||| || | Sbjct 50288 TCAGAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAACT 50347 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | ||||| || |||| Sbjct 50348 CTCTTACATCTTGGGTCTCCAC 50369 Score = 104 bits (114), Expect = 3e-17 Identities = 157/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| || || |||||||||| ||| | || | ||| ||||| |||| Sbjct 47426 ACAGTTTCCCTGTAGTTGGTCACAGTCCCCAGGTGCAGTACCTGGCAGATCACATCCT-- 47483 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| | || || ||||| || |||||||| ||||| Sbjct 47484 -TCCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTCCCA 47542 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| | | | |||||| || || || | || || | || ||||| | Sbjct 47543 TTGGGGTGTGCGATAATCTCAGTACTGTTCTCAATCTCTGAGCCAGAGACCTTCCAGGAG 47602 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || | ||| ||||| | |||| | ||||||||||| || |||| Sbjct 47603 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 47645 >seq8580 Length=102708 Score = 123 bits (136), Expect = 3e-23 Identities = 416/639 (65%), Gaps = 13/639 (2%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | ||||||||| | | || || | | | Sbjct 81440 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 81499 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 81500 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 81559 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || | || | || || | || |||| || || Sbjct 81560 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 81619 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 81620 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 81679 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 81680 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 81737 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 81738 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 81796 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 81797 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 81851 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | || | ||| | | ||||| ||||| || ||||| || Sbjct 81852 TTCAAACACGAAGGGGTTCGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 81911 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGCT 177421 |||||| | || || | || || ||||| |||| || || || || ||| | Sbjct 81912 GTCGCGGCGATAAGTCAGAGTCAGGTTGAACAGGTGCTCAATGCCGCTCTTCTGGGGTGT 81971 Query 177422 GTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGT 177481 || | | || ||||| || |||||||| ||||| || || |||| ||| || | | | Sbjct 81972 GTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTCGCCTGCTG 82031 Query 177482 AGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTG 177520 ||||| | || |||| ||| || |||| ||| || Sbjct 82032 AGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATG 82070 >seq16711 Length=40113 Score = 82.4 bits (90), Expect = 9e-11 Identities = 223/336 (66%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | ||||| || || || || ||| | | |||||| Sbjct 4791 ACCATCTCAGCATTGGTCTTTATAGGAAAATCTGTCCCACACGTATTCAGTAAGTATTTC 4850 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | | ||| || | | || || | | ||||||||| || ||||| || | Sbjct 4851 CA--TGGCACCGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 4908 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || ||||| || || | ||||| || |||| | |||||||| ||| || | Sbjct 4909 ACCAGGAGGCGTAAACCACCCGGACCAACTTACTGGCCATGAAGACATTTGGGAAGCAGG 4968 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| || || || Sbjct 4969 AAATGATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCCACATGGAC 5026 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||||| ||||||||||| || | || | ||| | | ||||| | || ||||| Sbjct 5027 GCAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCGAAGTTTTCAATCTT 5086 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| | ||| || || |||||||| || Sbjct 5087 CTCATGGACCACCACAGAGTAGGCGATGGGGAAGTC 5122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578018399428800