Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq17051 129 1e-24
seq561 129 1e-24
seq5560 114 3e-20
seq10582 113 1e-19
seq1039 107 5e-18
seq25372 100 7e-16
seq2392 96.9 8e-15
seq1608 91.5 3e-13
seq18093 86.0 1e-11
seq2543 84.2 5e-11
>seq17051
Length=38469
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || |||||| | || || ||| || || ||| | |||
Sbjct 11262 AAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATGGAAAAC 11321
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||||||| | ||| |||||||| |||||
Sbjct 11322 GTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGACCGGCAAAGACTGATCTTT 11381
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| | |||||| | || |||||| | || || |||||
Sbjct 11382 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 11441
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| ||||| |||||||||||
Sbjct 11442 ACTCTTCATCTTGTGTTGAGACTTCG 11467
Score = 96.9 bits (106), Expect = 8e-15
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| |||||||| ||||| || || | || ||||||| ||||||
Sbjct 11467 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 11408
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTG 204852
| |||||||||||| ||||| || || ||||| || | |||
Sbjct 11407 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTG 11367
>seq561
Length=508305
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || ||||| || || |||||| | || || ||| | || ||| | |||
Sbjct 125685 AAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTGCGATACAATAGAAAAC 125744
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||||||| || ||| |||||||| |||||
Sbjct 125745 GTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 125804
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| | |||||| | || |||||| | || || ||||
Sbjct 125805 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTTC 125864
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| ||||| |||||||||||
Sbjct 125865 ACTCTTCATCTTGTGTTGAGACTTCG 125890
Score = 93.3 bits (102), Expect = 1e-13
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| |||||||| |||| || || | || ||||||| ||||||
Sbjct 125890 CGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 125831
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||||||||| ||||| || || ||||| || | ||| ||
Sbjct 125830 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 125787
>seq5560
Length=149305
Score = 114 bits (126), Expect = 3e-20
Identities = 157/218 (72%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || | || || || ||||| | |||||| | || || ||| || ||
Sbjct 93198 CAGATTTTCTTGAAGACCCTGACAGGGATGGGCATCACTCTCGAGGTTGAACCCTCGGAT 93257
Query 206233 ACAGTCGAATCA-GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| | ||| | |||||| |||| || || || ||||||||| || ||| ||
Sbjct 93258 GCAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGACCAGCA 93317
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
|||||| ||||| || || ||||| ||||||||||| | |||||| | || |||||| |
Sbjct 93318 AAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACAT 93377
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389
|| || |||||||||||||| ||||| |||||||||
Sbjct 93378 TCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACTTC 93415
Score = 96.9 bits (106), Expect = 8e-15
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812
||||||||| ||||| |||||||||||||| || || | || ||||||| |||||| |
Sbjct 93415 GAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 93356
Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
|||||||||||| ||||| || || ||||| || | ||| ||
Sbjct 93355 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 93313
>seq10582
Length=81843
Score = 113 bits (124), Expect = 1e-19
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || |||||| | || || ||| || || ||| | |||
Sbjct 38727 AAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATAGAAAAC 38668
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||| | || || || ||||||||| || ||| |||||||| |||||
Sbjct 38667 GTAAAGGCCAAGGTCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 38608
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| |||||| | || |||||| | || || ||||
Sbjct 38607 GCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAACATTCAAAAGGAGTTC 38548
Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389
|| ||||| ||||| ||||||||||
Sbjct 38547 ACGCTTCATCTTGTGTTGAGACTTC 38523
>seq1039
Length=395486
Score = 107 bits (118), Expect = 5e-18
Identities = 148/206 (72%), Gaps = 1/206 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || |||||| | | || ||| || || || | |||
Sbjct 351845 AAGACCCTGACGGGGAAGACCATCACTCTTAAGGTCGAACCCTCGGATGCAATAGAAAAT 351904
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || |||||||| || ||| |||||||| |||||
Sbjct 351905 GTAAAGGCCAAGATCCAGGACAAGAAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 351964
Query 206305 GCCGGAAAGCAGT-TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|| || ||||| ||||||||||| | | |||| | || |||||||| || || |||||
Sbjct 351965 GCAGGCAAGCAAACTGGAAGATGGACGTATTTTGTCTGACTACAACGTTCAAAAGGAGTC 352024
Query 206364 TACTCTTCACCTTGTTTTGAGACTTC 206389
||||||| ||||| ||||||||||
Sbjct 352025 CGCTCTTCATCTTGTGTTGAGACTTC 352050
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/104 (79%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812
|||||||||| ||||| ||||||| ||||| || || || || ||||||| |||| | |
Sbjct 352050 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATAC 351991
Query 204813 TTCCATCTTCCAG-CTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
|||||||||||| ||||| || || ||||| || | ||| ||
Sbjct 351990 GTCCATCTTCCAGTTTGCTTGCCTGCAAAGATCAGTCTTTGCTG 351947
>seq25372
Length=10183
Score = 100 bits (110), Expect = 7e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || | || ||||| || || |||||| |||| || ||| || ||
Sbjct 9071 CAGATTTTTGTGAAGATCCTGACAGGGAAGACCATCACTCTGGAGGTCGAACCCTCGGAT 9130
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
||| ||| ||||| ||||| ||||| || || | |||| | || |||
Sbjct 9131 ACAACAGAAAATGTAAACGCCAAGATCCAAGATAAGGATGTAATTCCTTCTAACCAGCAA 9190
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||| | || || || || ||||| ||||||||||| | |||||| | || ||||||
Sbjct 9191 AGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACAGT 9250
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||| |||||||| ||| | |||||||||||
Sbjct 9251 CAAAAGGAGTCCACTCTTCATCTTCTGTTGAGACTTCG 9288
>seq2392
Length=260735
Score = 96.9 bits (106), Expect = 8e-15
Identities = 137/190 (72%), Gaps = 6/190 (3%)
Strand=Plus/Plus
Query 206203 ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA-GTAAAGCAAAAGATTCA 206261
|| |||||| | ||||| ||| || || ||| ||| | |||||| ||||| ||
Sbjct 4749 ACCATCACTCTTGAAGTTGAACCCTCAGATACAACAGAAAAATGTAAAGGTCAAGATCCA 4808
Query 206262 AGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGA 206321
|| || ||||||||| || ||| |||||||| ||||| || || | ||| ||||
Sbjct 4809 GGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAGGCAACTGGA 4868
Query 206322 AGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT-TGTTT 206380
||||||| | ||||| || |||||| | || || ||||| |||||||| || | |
Sbjct 4869 AGATGGATGTACTTT----GACTACAACATTCAAAAGGAGTCCACTCTTCATCTAAATGT 4924
Query 206381 TGAGACTTCG 206390
||||||||||
Sbjct 4925 TGAGACTTCG 4934
>seq1608
Length=321383
Score = 91.5 bits (100), Expect = 3e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 206260 CAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTG 206319
|| || || ||||||||| || ||| |||||||| ||||| || || ||||| ||
Sbjct 105488 CAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTG 105429
Query 206320 GAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379
||||||||| | |||||| | || | ||| || || ||||| | |||||| |||||
Sbjct 105428 GAAGATGGACGTACTTTGTCTGACCAAAACACTCAAAAGGAGTCCAGTCTTCATCTTGTG 105369
Query 206380 TTGAGACTTC 206389
||||||||||
Sbjct 105368 TTGAGACTTC 105359
>seq18093
Length=33488
Score = 86.0 bits (94), Expect = 1e-11
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| |||| ||||| |||||| |||| || |||
Sbjct 3002 ACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCC 2943
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || |||||||| || || ||| || || || ||||| || || ||
Sbjct 2942 AAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAA 2883
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||||||||| ||| | | ||||||||| |||||||||||||||| || |||
Sbjct 2882 CAGCTGGAAGATGGCCACACTCTTTCTGATTACAACATCCAGAAAGAGTCTACCCTGCAC 2823
Query 206374 CTTGT 206378
|| ||
Sbjct 2822 CTGGT 2818
>seq2543
Length=251032
Score = 84.2 bits (92), Expect = 5e-11
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 206169 GTAC-CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTT 206227
|||| ||||| || | || || || || || || || ||||| |||| |||||
Sbjct 121810 GTACGCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGCCCA 121751
Query 206228 CTGACACAGTC--GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGA 206285
|||||| || |||| || ||| ||||| || || || ||||| || ||| |
Sbjct 121750 GTGACACCATCAAGAAT--GTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCG-A 121694
Query 206286 CGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTA 206345
| || || || ||||| || || || ||| ||||||| || | ||| | | |||||
Sbjct 121693 CCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCTGCACTATTTCTGATTA 121634
Query 206346 CAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378
|||| |||||||||||||||| || ||||| ||
Sbjct 121633 CAACATCCAGAAAGAGTCTACCCTGCACCTGGT 121601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1180954627654963
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |