Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq17051 129 1e-24 seq561 129 1e-24 seq5560 114 3e-20 seq10582 113 1e-19 seq1039 107 5e-18 seq25372 100 7e-16 seq2392 96.9 8e-15 seq1608 91.5 3e-13 seq18093 86.0 1e-11 seq2543 84.2 5e-11 >seq17051 Length=38469 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || ||| || || ||| | ||| Sbjct 11262 AAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATGGAAAAC 11321 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| | ||| |||||||| ||||| Sbjct 11322 GTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGACCGGCAAAGACTGATCTTT 11381 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 11382 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 11441 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 11442 ACTCTTCATCTTGTGTTGAGACTTCG 11467 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 11467 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 11408 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTG 204852 | |||||||||||| ||||| || || ||||| || | ||| Sbjct 11407 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTG 11367 >seq561 Length=508305 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || |||||| | || || ||| | || ||| | ||| Sbjct 125685 AAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTGCGATACAATAGAAAAC 125744 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 125745 GTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 125804 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || |||| Sbjct 125805 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTTC 125864 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 125865 ACTCTTCATCTTGTGTTGAGACTTCG 125890 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| |||| || || | || ||||||| |||||| Sbjct 125890 CGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 125831 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || ||||| || | ||| || Sbjct 125830 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 125787 >seq5560 Length=149305 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || | || || || ||||| | |||||| | || || ||| || || Sbjct 93198 CAGATTTTCTTGAAGACCCTGACAGGGATGGGCATCACTCTCGAGGTTGAACCCTCGGAT 93257 Query 206233 ACAGTCGAATCA-GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| | |||||| |||| || || || ||||||||| || ||| || Sbjct 93258 GCAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGACCAGCA 93317 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||| ||||| || || ||||| ||||||||||| | |||||| | || |||||| | Sbjct 93318 AAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACAT 93377 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 || || |||||||||||||| ||||| ||||||||| Sbjct 93378 TCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACTTC 93415 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 ||||||||| ||||| |||||||||||||| || || | || ||||||| |||||| | Sbjct 93415 GAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 93356 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||| ||||| || || ||||| || | ||| || Sbjct 93355 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 93313 >seq10582 Length=81843 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || ||| || || ||| | ||| Sbjct 38727 AAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATAGAAAAC 38668 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||| | || || || ||||||||| || ||| |||||||| ||||| Sbjct 38667 GTAAAGGCCAAGGTCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 38608 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| |||||| | || |||||| | || || |||| Sbjct 38607 GCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAACATTCAAAAGGAGTTC 38548 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 || ||||| ||||| |||||||||| Sbjct 38547 ACGCTTCATCTTGTGTTGAGACTTC 38523 >seq1039 Length=395486 Score = 107 bits (118), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | | || ||| || || || | ||| Sbjct 351845 AAGACCCTGACGGGGAAGACCATCACTCTTAAGGTCGAACCCTCGGATGCAATAGAAAAT 351904 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || |||||||| || ||| |||||||| ||||| Sbjct 351905 GTAAAGGCCAAGATCCAGGACAAGAAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 351964 Query 206305 GCCGGAAAGCAGT-TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| ||||||||||| | | |||| | || |||||||| || || ||||| Sbjct 351965 GCAGGCAAGCAAACTGGAAGATGGACGTATTTTGTCTGACTACAACGTTCAAAAGGAGTC 352024 Query 206364 TACTCTTCACCTTGTTTTGAGACTTC 206389 ||||||| ||||| |||||||||| Sbjct 352025 CGCTCTTCATCTTGTGTTGAGACTTC 352050 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| ||||||| ||||| || || || || ||||||| |||| | | Sbjct 352050 GAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATAC 351991 Query 204813 TTCCATCTTCCAG-CTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||| ||||| || || ||||| || | ||| || Sbjct 351990 GTCCATCTTCCAGTTTGCTTGCCTGCAAAGATCAGTCTTTGCTG 351947 >seq25372 Length=10183 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || | || ||||| || || |||||| |||| || ||| || || Sbjct 9071 CAGATTTTTGTGAAGATCCTGACAGGGAAGACCATCACTCTGGAGGTCGAACCCTCGGAT 9130 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| ||| ||||| ||||| ||||| || || | |||| | || ||| Sbjct 9131 ACAACAGAAAATGTAAACGCCAAGATCCAAGATAAGGATGTAATTCCTTCTAACCAGCAA 9190 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || || ||||| ||||||||||| | |||||| | || |||||| Sbjct 9191 AGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACAGT 9250 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| |||||||| ||| | ||||||||||| Sbjct 9251 CAAAAGGAGTCCACTCTTCATCTTCTGTTGAGACTTCG 9288 >seq2392 Length=260735 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 206203 ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA-GTAAAGCAAAAGATTCA 206261 || |||||| | ||||| ||| || || ||| ||| | |||||| ||||| || Sbjct 4749 ACCATCACTCTTGAAGTTGAACCCTCAGATACAACAGAAAAATGTAAAGGTCAAGATCCA 4808 Query 206262 AGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGA 206321 || || ||||||||| || ||| |||||||| ||||| || || | ||| |||| Sbjct 4809 GGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAGGCAACTGGA 4868 Query 206322 AGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT-TGTTT 206380 ||||||| | ||||| || |||||| | || || ||||| |||||||| || | | Sbjct 4869 AGATGGATGTACTTT----GACTACAACATTCAAAAGGAGTCCACTCTTCATCTAAATGT 4924 Query 206381 TGAGACTTCG 206390 |||||||||| Sbjct 4925 TGAGACTTCG 4934 >seq1608 Length=321383 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 206260 CAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTG 206319 || || || ||||||||| || ||| |||||||| ||||| || || ||||| || Sbjct 105488 CAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTG 105429 Query 206320 GAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||| | |||||| | || | ||| || || ||||| | |||||| ||||| Sbjct 105428 GAAGATGGACGTACTTTGTCTGACCAAAACACTCAAAAGGAGTCCAGTCTTCATCTTGTG 105369 Query 206380 TTGAGACTTC 206389 |||||||||| Sbjct 105368 TTGAGACTTC 105359 >seq18093 Length=33488 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 3002 ACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCC 2943 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || |||||||| || || ||| || || || ||||| || || || Sbjct 2942 AAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAA 2883 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| ||| | | ||||||||| |||||||||||||||| || ||| Sbjct 2882 CAGCTGGAAGATGGCCACACTCTTTCTGATTACAACATCCAGAAAGAGTCTACCCTGCAC 2823 Query 206374 CTTGT 206378 || || Sbjct 2822 CTGGT 2818 >seq2543 Length=251032 Score = 84.2 bits (92), Expect = 5e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 206169 GTAC-CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTT 206227 |||| ||||| || | || || || || || || || ||||| |||| ||||| Sbjct 121810 GTACGCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGCCCA 121751 Query 206228 CTGACACAGTC--GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGA 206285 |||||| || |||| || ||| ||||| || || || ||||| || ||| | Sbjct 121750 GTGACACCATCAAGAAT--GTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCG-A 121694 Query 206286 CGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTA 206345 | || || || ||||| || || || ||| ||||||| || | ||| | | ||||| Sbjct 121693 CCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCTGCACTATTTCTGATTA 121634 Query 206346 CAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||| |||||||||||||||| || ||||| || Sbjct 121633 CAACATCCAGAAAGAGTCTACCCTGCACCTGGT 121601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180954627654963