Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq16347 113 1e-21 seq1823 113 1e-21 seq4199 107 6e-20 seq151 102 3e-18 seq6549 100 9e-18 seq8255 98.7 3e-17 seq2421 98.7 3e-17 seq1787 98.7 3e-17 seq21 98.7 3e-17 seq6176 84.2 7e-13 seq3909 78.8 3e-11 >seq16347 Length=41843 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 36067 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 36126 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 36127 CCGGGTTTCAGC 36138 >seq1823 Length=301725 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 241252 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 241311 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 241312 CCGGGTTTCAGC 241323 >seq4199 Length=183833 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 108009 GCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 108068 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 108069 CCGGGTTTCAGC 108080 >seq151 Length=797873 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 527279 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 527220 Query 2827 CCCCGGGCTTCAGC 2840 ||||| ||| || Sbjct 527219 TCCCGGCTTTCGGC 527206 >seq6549 Length=130944 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 103249 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 103190 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 103189 CCCGGGTTTCGGC 103177 Score = 98.7 bits (108), Expect = 3e-17 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||||| | Sbjct 48654 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCTCTGGTTCGA 48595 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 48594 TCCCGGGTTTCGGC 48581 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 76390 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 76449 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 76450 CCGGGTTTCGGC 76461 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| |||||||| |||||||||||||||||| |||||||||||| | Sbjct 82697 GCCGAAATAGCTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAAGTCCCTGGTTCACTC 82638 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 82637 CCGGGTTTCGGC 82626 >seq8255 Length=106613 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 18108 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 18167 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 18168 CCGGGTTTCGGC 18179 >seq2421 Length=259196 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 161544 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 161603 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 161604 CCGGGTTTCGGC 161615 >seq1787 Length=304325 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 60952 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 60893 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 60892 CCGGGTTTCGGC 60881 >seq21 Length=1437949 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 85066 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 85125 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 85126 CCGGGTTTCGGC 85137 >seq6176 Length=137598 Score = 84.2 bits (92), Expect = 7e-13 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||| |||||||||||| |||||||||| |||||||| | ||| Sbjct 81580 GAAATAGCTCAGTTGGGAGACCATTAGACTGAAAATCTAAAGGTTCCTGGTTCGATCCCA 81639 Query 2832 GGCTTCAGC 2840 || ||| || Sbjct 81640 GGTTTCGGC 81648 Score = 78.8 bits (86), Expect = 3e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2785 TGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 ||||||||| |||||||||||||||||||||||||||||| | |||||| ||| || Sbjct 87055 TGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTTTCGGC 87110 >seq3909 Length=192770 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||| |||| |||||| ||||||||||||||||||||||||||||| | | Sbjct 59158 GCTGAAATAGCTTGGTTGTGAGAGCCTTAGACTGAAGATCTAAAGGTCCCTGGTTTGATC 59099 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 59098 CTGGGTTT 59091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15839683573935