Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq561 122 8e-23
seq17051 113 4e-20
seq10582 107 2e-18
seq393 104 2e-17
seq18093 93.3 4e-14
seq2543 91.5 1e-13
seq1014 91.5 1e-13
seq1039 84.2 2e-11
seq5560 82.4 7e-11
>seq561
Length=508305
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | |||||||| | ||| | || |||||||||||||||||| || | |
Sbjct 125896 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGAC 125837
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || ||||| ||||| || ||||| |||| | |||||||| | ||||
Sbjct 125836 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 125777
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||||||| |||||| ||| | || | | || |||| | ||| |||
Sbjct 125776 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACC 125717
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || |||| || ||||| || ||||||||
Sbjct 125716 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 125670
>seq17051
Length=38469
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | |||||||| | ||| | || |||||||||||||||||| || | |
Sbjct 11473 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 11414
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || ||||| ||||| || ||||| |||| | ||| |||| ||||
Sbjct 11413 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGA 11354
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||||||| |||||| ||| | || ||| || || | ||| |||
Sbjct 11353 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACC 11294
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || ||||||| || ||||| || ||||||||
Sbjct 11293 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 11247
>seq10582
Length=81843
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||| | | |||||||| | ||| | ||| |||||||||||||||||| || | |
Sbjct 38516 CCACCATGAAGTCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGAC 38575
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || | | || ||||| ||||| || ||||| |||| | |||||||| | ||||
Sbjct 38576 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 38635
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||||||| || ||| ||| | || | | || || | ||| |||
Sbjct 38636 ATTCCTTCCTTGTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACC 38695
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || ||||||| || ||||| || ||||||||
Sbjct 38696 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 38742
>seq393
Length=578971
Score = 104 bits (114), Expect = 2e-17
Identities = 140/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| || || ||||||||||| | | || || | || |||||||| || || |||||
Sbjct 168917 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAG 168976
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|| | || ||||||||| | || | || ||||| ||| |||||| ||||| | |
Sbjct 168977 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 169036
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | |||||||||| ||||| || || || |||| || ||||||
Sbjct 169037 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 169096
Query 35726 AATATCTGCATTCTG 35740
|| ||||||||| ||
Sbjct 169097 AAGATCTGCATTTTG 169111
>seq18093
Length=33488
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || ||||||||||| | | || | | || |||||||| || || |||||
Sbjct 2835 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAA 2894
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || ||||||||| | || | || || || ||| |||||| ||||| |
Sbjct 2895 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTT 2954
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | |||||||||| ||||| || || || ||||| || |||||
Sbjct 2955 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCAC 3014
Query 35725 AAATATCTGCATTCTG 35740
|| ||||||||| ||
Sbjct 3015 GAAGATCTGCATTTTG 3030
>seq2543
Length=251032
Score = 91.5 bits (100), Expect = 1e-13
Identities = 135/190 (71%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || ||||||||||| | | || | |||| |||||||| || || |||||
Sbjct 121618 CTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCCAGCTGTTTGCCTGCAAA 121677
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || |||||||| || || | || ||||| ||| |||||| ||||| | |
Sbjct 121678 GATGAGCCTCTGCTGGT-CGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 121736
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| ||||| || | |||||||||| |||||| || || ||||||| || ||| |
Sbjct 121737 CTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCCC 121796
Query 35725 AAATATCTGC 35734
|| ||||||
Sbjct 121797 GAAGATCTGC 121806
>seq1014
Length=401283
Score = 91.5 bits (100), Expect = 1e-13
Identities = 154/219 (70%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || | || ||| || || || || || || | || || || | || ||
Sbjct 41510 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTGCGGCCATCCTC 41569
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||| || ||||| || |||| ||||||||||| | || | || |||||||||
Sbjct 41570 CAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 41629
Query 35647 GATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705
||| ||| || || | | | | | ||||| || | || ||||| | ||||| || |
Sbjct 41630 GAT-TTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGAGTGATGGTCT 41688
Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744
| |||||||| || ||||| || ||||||| ||| ||||
Sbjct 41689 TGCCCGTCAAGGTCTTCACTAAGATCTGCA-TCTCTGCG 41726
>seq1039
Length=395486
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/228 (68%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||| | | |||||||| | ||| | | ||||||||||| |||||| || | |
Sbjct 352057 CCACCATGAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGAC 351998
Query 35570 AAGGTTCGCTCGTCGTCCAG-CTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628
|| | || | || ||||| ||||| || ||||| |||| | |||||||| | |||
Sbjct 351997 AAAATACGTCCATCTTCCAGTTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGG 351938
Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
|| | | ||||||| |||||| ||| | | || | | | || | ||| ||
Sbjct 351937 AATTCCTTTCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGAC 351878
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || ||||||| || ||||| || ||||||||
Sbjct 351877 CTTAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 351830
>seq5560
Length=149305
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||| | | |||| || | ||| | ||| |||||||||||||||||| || | |
Sbjct 93422 CCACCATGAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 93363
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || ||||| ||||| || ||||| |||| | |||||||| | ||||
Sbjct 93362 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 93303
Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652
| | ||||||||| | ||||
Sbjct 93302 ATTCCTTCCTTGTCCTGGCTCTT 93280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450471265671240
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