Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq561 122 8e-23 seq17051 113 4e-20 seq10582 107 2e-18 seq393 104 2e-17 seq18093 93.3 4e-14 seq2543 91.5 1e-13 seq1014 91.5 1e-13 seq1039 84.2 2e-11 seq5560 82.4 7e-11 >seq561 Length=508305 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 125896 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGAC 125837 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 125836 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 125777 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | || | | || |||| | ||| ||| Sbjct 125776 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACC 125717 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || |||| || ||||| || |||||||| Sbjct 125716 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 125670 >seq17051 Length=38469 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 11473 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 11414 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||| |||| |||| Sbjct 11413 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGA 11354 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | || ||| || || | ||| ||| Sbjct 11353 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACC 11294 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||||| || ||||| || |||||||| Sbjct 11293 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 11247 >seq10582 Length=81843 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | ||| |||||||||||||||||| || | | Sbjct 38516 CCACCATGAAGTCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGAC 38575 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 38576 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 38635 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| || ||| ||| | || | | || || | ||| ||| Sbjct 38636 ATTCCTTCCTTGTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACC 38695 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||||| || ||||| || |||||||| Sbjct 38696 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 38742 >seq393 Length=578971 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||||||||| | | || || | || |||||||| || || ||||| Sbjct 168917 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAG 168976 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||||||| | || | || ||||| ||| |||||| ||||| | | Sbjct 168977 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 169036 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || || |||| || |||||| Sbjct 169037 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 169096 Query 35726 AATATCTGCATTCTG 35740 || ||||||||| || Sbjct 169097 AAGATCTGCATTTTG 169111 >seq18093 Length=33488 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || | | || |||||||| || || ||||| Sbjct 2835 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAA 2894 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || || || ||| |||||| ||||| | Sbjct 2895 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTT 2954 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || ||||| || ||||| Sbjct 2955 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCAC 3014 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 3015 GAAGATCTGCATTTTG 3030 >seq2543 Length=251032 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || | |||| |||||||| || || ||||| Sbjct 121618 CTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCCAGCTGTTTGCCTGCAAA 121677 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||| || || | || ||||| ||| |||||| ||||| | | Sbjct 121678 GATGAGCCTCTGCTGGT-CGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 121736 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | ||||| || | |||||||||| |||||| || || ||||||| || ||| | Sbjct 121737 CTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCCC 121796 Query 35725 AAATATCTGC 35734 || |||||| Sbjct 121797 GAAGATCTGC 121806 >seq1014 Length=401283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || ||| || || || || || || | || || || | || || Sbjct 41510 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTGCGGCCATCCTC 41569 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||| || ||||| || |||| ||||||||||| | || | || ||||||||| Sbjct 41570 CAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 41629 Query 35647 GATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||| ||| || || | | | | | ||||| || | || ||||| | ||||| || | Sbjct 41630 GAT-TTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGAGTGATGGTCT 41688 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744 | |||||||| || ||||| || ||||||| ||| |||| Sbjct 41689 TGCCCGTCAAGGTCTTCACTAAGATCTGCA-TCTCTGCG 41726 >seq1039 Length=395486 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | | ||||||||||| |||||| || | | Sbjct 352057 CCACCATGAAGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGAC 351998 Query 35570 AAGGTTCGCTCGTCGTCCAG-CTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || | || | || ||||| ||||| || ||||| |||| | |||||||| | ||| Sbjct 351997 AAAATACGTCCATCTTCCAGTTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGG 351938 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || | | ||||||| |||||| ||| | | || | | | || | ||| || Sbjct 351937 AATTCCTTTCTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGAC 351878 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||||| || ||||| || |||||||| Sbjct 351877 CTTAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 351830 >seq5560 Length=149305 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||| || | ||| | ||| |||||||||||||||||| || | | Sbjct 93422 CCACCATGAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 93363 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 93362 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 93303 Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652 | | ||||||||| | |||| Sbjct 93302 ATTCCTTCCTTGTCCTGGCTCTT 93280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450471265671240