Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1525 196 4e-45 seq25410 167 2e-36 seq8264 123 2e-23 seq549 107 2e-18 seq6689 93.3 3e-14 seq1670 86.0 5e-12 >seq1525 Length=329219 Score = 196 bits (216), Expect = 4e-45 Identities = 581/891 (65%), Gaps = 18/891 (2%) Strand=Plus/Plus Query 43702 TGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTC 43761 |||| | ||||| || |||| | ||| | ||||| |||| || | || |||| || Sbjct 304294 TGTCTTCTTTCCTATCGAATACCGTGATGTTTGGCAGATGTGTAAGCACGCTGAGGCTTC 304353 Query 43762 ATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTA 43819 | ||||| || || || || || | | | ||| | ||||| | | || | Sbjct 304354 CTGCTGGACGGCTGAGGAGGTGGACCTTTCCTAGGACATTCAGCACCGGGAA--GCCCTG 304411 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || || | || | |||||| || || || |||| || | ||| || || || || Sbjct 304412 AAGCCTGAGGAGAGACATTTCATTTCGCATGTCCTGGCTTTCTCTGCAGCAAGTGATGGC 304471 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 |||| |||||||| |||| ||| || ||||||| ||| | | ||||| || Sbjct 304472 GTAGTAAATGAAAACCTGGTGGAGCGGCTTAGCCAAGAAGCTCAGATGACGGAAGCCCGT 304531 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 ||| ||||| || ||||||||||| ||||| || |||||||||||||| ||||| || Sbjct 304532 GATTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCGGAAATGTATAGTCTCCTC 304591 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACA 44059 | || || ||| | |||||| | || | | | | || || || || || ||| Sbjct 304592 AATGACACTTACGTTAAAGATTCCAAAGAAAGGGAATCTCTCTTCAACGCCATTGAGACA 304651 Query 44060 GTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATT---CAAATGAT 44116 | ||| | || | || ||||| |||||| | ||||| | || | | | Sbjct 304652 ATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATCGAGGACACAGAGGCT 304711 Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 | | ||||||||| | | || ||||| | ||||||||||| |||||||| || || Sbjct 304712 ACGTATGGAGAACGTGTCATAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCT 304771 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 ||||| | ||||| ||| | ||||||||||| ||||||| || | || ||||| ||| Sbjct 304772 TTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAAT 304831 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296 || | || || | || || || ||||| || || ||||| ||| || | | | | Sbjct 304832 GAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACAC 304891 Query 44297 CTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAG 44356 || | || | || ||||| ||| | | | ||| || | || ||||| | | Sbjct 304892 CT--GCTAC-ACAAACCTTCGGAGCAGAGAGTCAAAGAAATAATCGTCAGTGCAGTTAGG 304948 Query 44357 ATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTT 44416 ||||||| || | || || | | | || || | || || |||||| | Sbjct 304949 CTAGAACAGGAGCGCCTCACGGAGGCCTCAACAGTGAAGCTCATCGGGATGAATTGTGCT 305008 Query 44417 TTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGAT 44476 |||||||| || || || ||| | | ||||| | | | |||| ||||||| | Sbjct 305009 TTGATGAAGCAGTACATCAAATTCCTGGCAGACAGACTTATGCTGGAGCTGGGTT----T 305064 Query 44477 AAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGG 44532 | || | || ||| |||| || ||||| |||||||| |||||||| ||||||| Sbjct 305065 TAGCAAGGTTTTCTGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGG 305124 Query 44533 CAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGT 44583 || || ||||| ||||| || | || || || |||||| ||||| || Sbjct 305125 GAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGARGATGGGAGT 305175 >seq25410 Length=10104 Score = 167 bits (184), Expect = 2e-36 Identities = 219/299 (73%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || |||| ||||| || ||||| ||||| || ||||| |||| Sbjct 9807 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 9866 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || ||||||||||| ||||| || || | | || ||| | ||||| ||| || Sbjct 9867 TCCTTTTGGACAGCTGAAGAGGTGGACCTTTCCAAGGACATTCAGCAC--TGGGAAGCCC 9924 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || | || | | |||| || || ||| |||| || ||||| || || || | Sbjct 9925 TGAAGCCTGAGGAGAGATATTTCATTTCGCATGTTCTGGCTTTCTTTGCAGCAAGTGATG 9984 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | ||||| ||||||| ||||| |||||| ||||||||||| |||| | ||||| Sbjct 9985 GCATAGTAAATGAAAGCTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTA-CGGAAGCC 10043 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995 | ||||| ||||| || ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 10044 CATTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCTGAAATGTATAGTCT 10102 >seq8264 Length=106531 Score = 123 bits (136), Expect = 2e-23 Identities = 177/248 (71%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||| | ||| | ||| | || ||| | | Sbjct 978 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATATAAGAAAACTGGTAAATTGGT 919 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || || || |||| |||||||| |||| || |||||||| ||| | | | Sbjct 918 ATTTCTTGGATTGGATAATGTGGGAAAAACAACATTGCTACACATGCTAAAAGATGACGG 859 Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379 | | | ||| ||| | |||||||| || || ||| ||||||| ||||||||||| Sbjct 858 ACTTGGACAACATGTCCCAATGTTACATCCCACTTCAGAAGAACTAACCATTGCTGGCAT 799 Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439 | |||| || |||||| | || ||||| ||||||| | ||| ||||| |||| || Sbjct 798 GATCTTTACAACTTTTGATCTGGGTGGACATGTTCAAGCTTGAAGAGTGTGGAAAAACTA 739 Query 47440 TTTTCATG 47447 ||| || Sbjct 738 CCTTCCTG 731 >seq549 Length=511996 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct 262567 CGGTTTAGCCAAGAAGTTCAGATTACG-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 262509 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 262508 CATGGAAAACATCCATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 262451 >seq6689 Length=128430 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/225 (71%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 77341 GTCCAGCTTCATAAAGTCATCCTTGTTGA-CAACTGACCCTCCGCCATGCAG--CCTCCA 77397 |||||| | || ||||| || ||||||| || || ||| | | ||| |||||| Sbjct 25489 GTCCAGTTCCACGAAGTCCTCTTTGTTGATCACCT---CCTTCCCTGTGCTTGTCCTCCA 25545 Query 77398 GCCGTTCTGCTTCCAGTTCTTA-ACCCACTTAGTCACACCATTGATGGTGAACATGCTGT 77456 || |||| ||||||| |||| ||||| ||||| | |||||||| || |||||||||| Sbjct 25546 TCCATTCTTCTTCCAGA-CTTACACCCAATTAGTGATGCCATTGATAGTAAACATGCTGT 25604 Query 77457 CTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATG 77516 | ||||||| |||| || |||| || | ||| ||||||| | |||||| | | Sbjct 25605 CCGTGTAGAGAACCAACTCACTGATGTTCTGAGCCTTCGCTTGTTCGATGGCTTTGCAGG 25664 Query 77517 CAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTC 77561 | || | || || || | |||||||| ||| ||| ||||| Sbjct 25665 CTGCACGAATCTCTGCTCTTTGGTTTGTTTGTCACCCAGGAAGTC 25709 >seq1670 Length=315515 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 184453 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 184394 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 184393 AACGAGTTTCAGAGTATCAGCG 184372 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| | |||||||| Sbjct 214333 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 214274 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 214273 TCCTTCTGGACAGCAGAAGAGGT 214251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397178908954015