Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 196 4e-45
seq25410 167 2e-36
seq8264 123 2e-23
seq549 107 2e-18
seq6689 93.3 3e-14
seq1670 86.0 5e-12
>seq1525
Length=329219
Score = 196 bits (216), Expect = 4e-45
Identities = 581/891 (65%), Gaps = 18/891 (2%)
Strand=Plus/Plus
Query 43702 TGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTC 43761
|||| | ||||| || |||| | ||| | ||||| |||| || | || |||| ||
Sbjct 304294 TGTCTTCTTTCCTATCGAATACCGTGATGTTTGGCAGATGTGTAAGCACGCTGAGGCTTC 304353
Query 43762 ATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTA 43819
| ||||| || || || || || | | | ||| | ||||| | | || |
Sbjct 304354 CTGCTGGACGGCTGAGGAGGTGGACCTTTCCTAGGACATTCAGCACCGGGAA--GCCCTG 304411
Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879
|| || | || | |||||| || || || |||| || | ||| || || || ||
Sbjct 304412 AAGCCTGAGGAGAGACATTTCATTTCGCATGTCCTGGCTTTCTCTGCAGCAAGTGATGGC 304471
Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939
|||| |||||||| |||| ||| || ||||||| ||| | | ||||| ||
Sbjct 304472 GTAGTAAATGAAAACCTGGTGGAGCGGCTTAGCCAAGAAGCTCAGATGACGGAAGCCCGT 304531
Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999
||| ||||| || ||||||||||| ||||| || |||||||||||||| ||||| ||
Sbjct 304532 GATTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCGGAAATGTATAGTCTCCTC 304591
Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACA 44059
| || || ||| | |||||| | || | | | | || || || || || |||
Sbjct 304592 AATGACACTTACGTTAAAGATTCCAAAGAAAGGGAATCTCTCTTCAACGCCATTGAGACA 304651
Query 44060 GTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATT---CAAATGAT 44116
| ||| | || | || ||||| |||||| | ||||| | || | | |
Sbjct 304652 ATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATCGAGGACACAGAGGCT 304711
Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176
| | ||||||||| | | || ||||| | ||||||||||| |||||||| || ||
Sbjct 304712 ACGTATGGAGAACGTGTCATAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCT 304771
Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236
||||| | ||||| ||| | ||||||||||| ||||||| || | || ||||| |||
Sbjct 304772 TTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAAT 304831
Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296
|| | || || | || || || ||||| || || ||||| ||| || | | | |
Sbjct 304832 GAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACAC 304891
Query 44297 CTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAG 44356
|| | || | || ||||| ||| | | | ||| || | || ||||| | |
Sbjct 304892 CT--GCTAC-ACAAACCTTCGGAGCAGAGAGTCAAAGAAATAATCGTCAGTGCAGTTAGG 304948
Query 44357 ATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTT 44416
||||||| || | || || | | | || || | || || |||||| |
Sbjct 304949 CTAGAACAGGAGCGCCTCACGGAGGCCTCAACAGTGAAGCTCATCGGGATGAATTGTGCT 305008
Query 44417 TTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGAT 44476
|||||||| || || || ||| | | ||||| | | | |||| ||||||| |
Sbjct 305009 TTGATGAAGCAGTACATCAAATTCCTGGCAGACAGACTTATGCTGGAGCTGGGTT----T 305064
Query 44477 AAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGG 44532
| || | || ||| |||| || ||||| |||||||| |||||||| |||||||
Sbjct 305065 TAGCAAGGTTTTCTGAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGG 305124
Query 44533 CAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGT 44583
|| || ||||| ||||| || | || || || |||||| ||||| ||
Sbjct 305125 GAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGARGATGGGAGT 305175
>seq25410
Length=10104
Score = 167 bits (184), Expect = 2e-36
Identities = 219/299 (73%), Gaps = 6/299 (2%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | ||||| || |||| ||||| || ||||| ||||| || ||||| ||||
Sbjct 9807 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 9866
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817
|| ||||||||||| ||||| || || | | || ||| | ||||| ||| ||
Sbjct 9867 TCCTTTTGGACAGCTGAAGAGGTGGACCTTTCCAAGGACATTCAGCAC--TGGGAAGCCC 9924
Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877
| || || | || | | |||| || || ||| |||| || ||||| || || || |
Sbjct 9925 TGAAGCCTGAGGAGAGATATTTCATTTCGCATGTTCTGGCTTTCTTTGCAGCAAGTGATG 9984
Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936
| ||||| ||||||| ||||| |||||| ||||||||||| |||| | |||||
Sbjct 9985 GCATAGTAAATGAAAGCTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTA-CGGAAGCC 10043
Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995
| ||||| ||||| || ||||||||||| ||||| || ||||| |||||||| |||||
Sbjct 10044 CATTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCTGAAATGTATAGTCT 10102
>seq8264
Length=106531
Score = 123 bits (136), Expect = 2e-23
Identities = 177/248 (71%), Gaps = 1/248 (0%)
Strand=Plus/Minus
Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259
|| |||||| | || ||| | || ||||||||| | ||| | ||| | || ||| | |
Sbjct 978 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATATAAGAAAACTGGTAAATTGGT 919
Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319
|||||| || || || |||| |||||||| |||| || |||||||| ||| | | |
Sbjct 918 ATTTCTTGGATTGGATAATGTGGGAAAAACAACATTGCTACACATGCTAAAAGATGACGG 859
Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379
| | | ||| ||| | |||||||| || || ||| ||||||| |||||||||||
Sbjct 858 ACTTGGACAACATGTCCCAATGTTACATCCCACTTCAGAAGAACTAACCATTGCTGGCAT 799
Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439
| |||| || |||||| | || ||||| ||||||| | ||| ||||| |||| ||
Sbjct 798 GATCTTTACAACTTTTGATCTGGGTGGACATGTTCAAGCTTGAAGAGTGTGGAAAAACTA 739
Query 47440 TTTTCATG 47447
||| ||
Sbjct 738 CCTTCCTG 731
>seq549
Length=511996
Score = 107 bits (118), Expect = 2e-18
Identities = 96/118 (81%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| ||||| ||||| || ||||| ||||| || ||||||||
Sbjct 262567 CGGTTTAGCCAAGAAGTTCAGATTACG-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 262509
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| |||||||| ||||| || || || || ||||| ||||||
Sbjct 262508 CATGGAAAACATCCATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 262451
>seq6689
Length=128430
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/225 (71%), Gaps = 8/225 (4%)
Strand=Plus/Plus
Query 77341 GTCCAGCTTCATAAAGTCATCCTTGTTGA-CAACTGACCCTCCGCCATGCAG--CCTCCA 77397
|||||| | || ||||| || ||||||| || || ||| | | ||| ||||||
Sbjct 25489 GTCCAGTTCCACGAAGTCCTCTTTGTTGATCACCT---CCTTCCCTGTGCTTGTCCTCCA 25545
Query 77398 GCCGTTCTGCTTCCAGTTCTTA-ACCCACTTAGTCACACCATTGATGGTGAACATGCTGT 77456
|| |||| ||||||| |||| ||||| ||||| | |||||||| || ||||||||||
Sbjct 25546 TCCATTCTTCTTCCAGA-CTTACACCCAATTAGTGATGCCATTGATAGTAAACATGCTGT 25604
Query 77457 CTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATG 77516
| ||||||| |||| || |||| || | ||| ||||||| | |||||| | |
Sbjct 25605 CCGTGTAGAGAACCAACTCACTGATGTTCTGAGCCTTCGCTTGTTCGATGGCTTTGCAGG 25664
Query 77517 CAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTC 77561
| || | || || || | |||||||| ||| ||| |||||
Sbjct 25665 CTGCACGAATCTCTGCTCTTTGGTTTGTTTGTCACCCAGGAAGTC 25709
>seq1670
Length=315515
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| |
Sbjct 184453 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 184394
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 184393 AACGAGTTTCAGAGTATCAGCG 184372
Score = 82.4 bits (90), Expect = 6e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | |||||||| || || | |||||| ||| ||||||| ||| | ||||||||
Sbjct 214333 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 214274
Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782
|| || |||||||||||||| ||
Sbjct 214273 TCCTTCTGGACAGCAGAAGAGGT 214251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397178908954015
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |