Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 91.5 2e-13
seq549 89.7 6e-13
>seq1525
Length=329219
Score = 91.5 bits (100), Expect = 2e-13
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 59924 TAAACAAAAAG-CAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCAT-CATTTGCAC 59979
|||| || ||| |||| |||||| ||| ||||| ||| | ||| | | | || |
Sbjct 304662 TAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATCGAGGACACAGAGGCTACGTATGGAG 304721
Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039
||||| ||||||| ||||| |||||||| |||||||| ||||| || || | |
Sbjct 304722 AACGTGTCATAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGA 304781
Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099
| ||||||||||| || || || || ||||| ||||| | || ||||| || || |||
Sbjct 304782 TATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTA 304841
Query 60100 CCCGGGACGAGGG 60112
| | ||||||||
Sbjct 304842 GCAGAGACGAGGG 304854
>seq549
Length=511996
Score = 89.7 bits (98), Expect = 6e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039
||||| || |||| ||||| ||||||||||||||||| ||||| || || | |
Sbjct 260586 AACGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGA 260527
Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099
| |||||||||||||| || || || ||||| ||||| | || ||||| || || |||
Sbjct 260526 TATTCTGGCTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTA 260467
Query 60100 CCCGGGACGAGG 60111
| | |||||||
Sbjct 260466 GCAGAGACGAGG 260455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548132584198320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |