Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1525 91.5 2e-13 seq549 89.7 6e-13 >seq1525 Length=329219 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 59924 TAAACAAAAAG-CAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCAT-CATTTGCAC 59979 |||| || ||| |||| |||||| ||| ||||| ||| | ||| | | | || | Sbjct 304662 TAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATCGAGGACACAGAGGCTACGTATGGAG 304721 Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 ||||| ||||||| ||||| |||||||| |||||||| ||||| || || | | Sbjct 304722 AACGTGTCATAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGA 304781 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | ||||||||||| || || || || ||||| ||||| | || ||||| || || ||| Sbjct 304782 TATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTA 304841 Query 60100 CCCGGGACGAGGG 60112 | | |||||||| Sbjct 304842 GCAGAGACGAGGG 304854 >seq549 Length=511996 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 ||||| || |||| ||||| ||||||||||||||||| ||||| || || | | Sbjct 260586 AACGTGTCGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGA 260527 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | |||||||||||||| || || || ||||| ||||| | || ||||| || || ||| Sbjct 260526 TATTCTGGCTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTA 260467 Query 60100 CCCGGGACGAGG 60111 | | ||||||| Sbjct 260466 GCAGAGACGAGG 260455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548132584198320