Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq230 104 3e-17
seq1670 89.7 6e-13
seq7978 82.4 8e-11
>seq230
Length=691078
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| || |||| ||||||||||||| || | ||||| || ||
Sbjct 388939 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 388998
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| |||||||||||| || ||| ||||||||||| |||||||| |||| |
Sbjct 388999 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAGTTCTGAGCCAAATTGATA 389058
Query 117425 ATCGT 117429
|| ||
Sbjct 389059 ATGGT 389063
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | |||||||||||| ||||| || ||||||||
Sbjct 388939 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 388998
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | |||||| || || ||| ||||| || |||||||||||||| | |
Sbjct 388999 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAGTTCTGAGCCAAATTGATA 389058
Query 152149 ATCGT 152153
|| ||
Sbjct 389059 ATGGT 389063
>seq1670
Length=315515
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829
||||||||||||| || | |||||| ||||| | ||| |||||||||||||| | ||||
Sbjct 206374 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 206433
Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889
| | ||| || || ||| || || || |||||| || ||||| ||| |||||||
Sbjct 206434 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 206493
Query 74890 CGAC 74893
| ||
Sbjct 206494 CCAC 206497
>seq7978
Length=109952
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| |||||||| || ||||| || ||| || || || || ||
Sbjct 23332 GTGAAAATGTAACGAGGACTTGCAGCGTCTTTGCCCCCGTGAAGCCGGGTTCCAAACTGA 23273
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | |||| | | ||| | |||||| ||||||||||| ||||||||||| ||
Sbjct 23272 CCGATGGGCTGAAGCAAGTTAATGTTGTTACTCCCCACAAAGTTCTGAGCCAAGTTCACG 23213
Query 117425 ATCGT 117429
|| ||
Sbjct 23212 ATAGT 23208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546824720039400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |