Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq6451 123 3e-23 seq16711 93.3 6e-14 >seq6451 Length=132943 Score = 123 bits (136), Expect = 3e-23 Identities = 194/274 (71%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 ||||| |||||||| |||||| | || |||||||| | ||||| || || | ||| Sbjct 90822 GACACATACAGCCCGGACGAGTATCTCTGGGCCACTATTCAGAGGATCCCCGA-AGTCCC 90764 Query 14337 GGGGGGATCCCCGTTC--ACGTCA--AGTACGACACCTCGGACATGTGGGCCAAGGTCAG 14392 ||| || | || | | | || ||||||||| || |||||| || | | ||| Sbjct 90763 AGGG---TCACTGTCCTTAAGCCATAAGTACGACATGTCCGACATGCACGCGATTGCCAG 90707 Query 14393 GTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTG 14452 ||| ||||||||||| |||| || || || || || || |||| |||||||| || Sbjct 90706 GTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGCGCCCCCTACCCGCCGTG 90647 Query 14453 CGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAA 14512 | |||| ||||||| | | || | || | ||||| | || ||| |||| ||| || Sbjct 90646 CAGCGGCGTCCACGTGCGCTCCGTGTGTGTTTTCGGAGCGGGTGACTTGAACTGGATGTT 90587 Query 14513 GAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | |||| | ||| |||||||||||||||||||| Sbjct 90586 GCGCGTGCACCACTTGTTCGCCAACAAGTTCGAC 90553 >seq16711 Length=40113 Score = 93.3 bits (102), Expect = 6e-14 Identities = 179/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || |||||| |||||| | || || |||||||||||||| | ||| |||| | ||| Sbjct 5143 CCACTGAGCAGAGAAGAGTTAGACTTCCCCATCGCCTACTCTGTGGTGGTCCATGAGAAG 5084 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || || | ||||| || || ||| | || | || ||||| |||||| | ||||||||| Sbjct 5083 ATTGAAAACTTCGAACGGCTGCTGCGAGCTGTGTATGCCCCTCAGAACATATACTGCGTC 5024 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 || ||||| |||||| || |||| || ||| ||||||| ||| Sbjct 5023 CATGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAGGCCATCATTTCCTGC 4964 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| || || | ||||| | || | ||||| |||| ||||||| | Sbjct 4963 TTCCCAAATGTCTTCATGGCCAGTAAGTTGGTCCGGGTGGTTTACGCCTCCTGGTCCAGG 4904 Query 13911 GTGCAGGCCGACCTCAGCTGCATG 13934 |||||||| ||||| | ||| ||| Sbjct 4903 GTGCAGGCTGACCTGAACTGTATG 4880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658268176769280