Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq18172 325 3e-84
seq15026 187 2e-42
seq293 147 2e-30
seq1907 102 7e-17
seq721 95.1 1e-14
seq17849 82.4 6e-11
seq5426 82.4 6e-11
>seq18172
Length=33122
Score = 325 bits (360), Expect = 3e-84
Identities = 484/688 (70%), Gaps = 5/688 (1%)
Strand=Plus/Minus
Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897
|||| || || || || || | || |||||| | |||||||| || | || || |||||
Sbjct 27480 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGT 27421
Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957
| | ||| || ||||||| |||| ||||| || || || | || | ||| ||| |
Sbjct 27420 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCGCGTGGTGTGTG 27361
Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017
| |||||||| | || | ||||||||||||| | ||||| || | || |||||||
Sbjct 27360 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGYTGAAGGGCACACYCAGGCCCATGT 27306
Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077
| || ||||||||||| ||||| || || ||||| |||| |||||| ||||| || |
Sbjct 27305 CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAA 27246
Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30137
|||||||||||| || || |||||||| | ||||| || ||||| || |||| ||
Sbjct 27245 GGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTCGGATTCCAAGCACACAGGA 27186
Query 30138 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30197
|||| | ||||| || |||||| | |||| ||| | |||||||| ||||| |
Sbjct 27185 TGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTA 27126
Query 30198 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30257
| || | || || |||| ||| || |||| || | || |||||||||||||
Sbjct 27125 CTCCTTGATCTGAATAATCTGAATGCATATCTTTGTATTCGGTCCCAAAATGCCTCCACT 27066
Query 30258 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30317
| || || || || || || | || || ||| | ||| ||| ||| ||||||
Sbjct 27065 GAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCA 27006
Query 30318 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGG 30377
| ||||||| ||| || ||||| |||||||| || || ||||| ||| ||||| || |
Sbjct 27005 AGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 26946
Query 30378 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30437
||||||||| || ||| |||||||||| ||||||| || |||| || || || |
Sbjct 26945 CGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACAC 26886
Query 30438 TCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACA 30497
||||| || || || ||||| | | | |||| ||| | ||||| || ||||
Sbjct 26885 ATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACA 26826
Query 30498 CGGACAAGACTCCCGTGCCCGTCCTGTC 30525
| |||| | || |||||||| | |||
Sbjct 26825 CCGACAGGGTGCCGGTGCCCGTGCGGTC 26798
>seq15026
Length=49095
Score = 187 bits (206), Expect = 2e-42
Identities = 374/551 (68%), Gaps = 10/551 (2%)
Strand=Plus/Plus
Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923
||||| | |||||| | || | || ||||||||| | ||| || ||||||| ||||
Sbjct 46639 AGCTGCATTTTCAGCAGCTCAATGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 46698
Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983
||| | || || || | || || |||| ||| || |||||||| ||||| || | |||
Sbjct 46699 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAG 46758
Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043
||||||| ||| |||| || || || ||| |||| || ||||||||||| ||||| ||
Sbjct 46759 CTGGCGACGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACCTCTGGTACAGCTG-CAG 46817
Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAG------- 30096
|| ||||| || |||||| || || || | ||| |||||| | || ||
Sbjct 46818 GACAGCTCATGGTTCACCACGTAGAAGTGGCAAAAGGCATGGCACAGGGGCAGGGTGGCA 46877
Query 30097 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30156
| ||||| | ||||| | ||||| || || | ||||| | |||||||| ||
Sbjct 46878 GGGTATGAGAGGAAGATCTTT-TGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 46936
Query 30157 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA-GT 30215
|||| | |||| ||| | | |||||||| || || || || | || || |
Sbjct 46937 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTACTCCTTGACGTGAATACAT 46996
Query 30216 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30275
| || || |||| || || | ||| |||||||||| || | || || || |
Sbjct 46997 TTAAATCCACATCTTTGTATTCAGCCACCAAAGGCCTCCACTGAAAGCTATAAACTGGGC 47056
Query 30276 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30335
| | || || ||||| ||| || || ||||||| ||||||| ||| ||||
Sbjct 47057 CTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCCGT 47116
Query 30336 TGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395
||| |||||||| || || ||||| ||| ||||| || | |||||||| || |||
Sbjct 47117 GGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGAGCCCTTGA 47176
Query 30396 CGAACCACAGC 30406
|||||||||
Sbjct 47177 TCAACCACAGC 47187
>seq293
Length=643942
Score = 147 bits (162), Expect = 2e-30
Identities = 131/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||
Sbjct 264058 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 263999
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| || ||||||||||| ||||| || || ||||| |||| |
Sbjct 263998 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 263939
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
| ||| ||||| || | |||||||||||| || || ||||||||
Sbjct 263938 ATGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAG 263895
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| || || || |||||||||||||| || || || || || || | ||
Sbjct 260792 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 260733
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| ||
Sbjct 260732 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 260673
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||||| || || ||||| ||| ||||| || | ||||||||| ||
Sbjct 260672 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 260625
>seq1907
Length=295643
Score = 102 bits (112), Expect = 7e-17
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || || || || || || ||||| |||| || || ||||| |
Sbjct 59916 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 59857
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| || || |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 59856 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 59797
Query 110499 CTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 110530
||| || || |||| ||||||| || | |||||
Sbjct 59796 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 59765
>seq721
Length=458371
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || || || || || || ||||| |||| || || ||| | |
Sbjct 192700 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGCCCTT 192641
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| ||||| |||||| || || ||||||||||| || || |||||||| |||||| ||
Sbjct 192640 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATT 192581
Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530
||| || ||| |||||||| || | |||||
Sbjct 192580 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 192549
>seq17849
Length=34736
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 9034 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9093
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| || || |||||||| ||||||| ||||| || |||
Sbjct 9094 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9141
>seq5426
Length=152180
Score = 82.4 bits (90), Expect = 6e-11
Identities = 114/157 (73%), Gaps = 6/157 (4%)
Strand=Plus/Minus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || || || || || || |||| |||| || || ||||| ||
Sbjct 82213 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCT 82154
Query 110439 CAGAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCA 110494
| ||||| |||||| | || ||| |||||||| || || |||||||| |||||||
Sbjct 82153 TAAAGGTCGATTCTTCTGTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCA 82094
Query 110495 CGTTCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 110530
||||| || || |||| ||||| | || | |||||
Sbjct 82093 AATTCTGTTTACCTTCTG-CTGAAAAGGTTGTGGTCA 82058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406027136006676
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