Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq393 109 5e-19
seq18093 96.9 3e-15
seq2543 93.3 4e-14
seq3456 89.7 4e-13
seq17051 87.8 2e-12
seq561 86.0 5e-12
seq3799 84.2 2e-11
seq3805 82.4 7e-11
>seq393
Length=578971
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || |||||||||||| | || || || || ||||| ||
Sbjct 169107 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 169048
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || || || || || || || |||||||| || || || ||
Sbjct 169047 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 168988
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || |||||||| ||||||| | || |||| |||||||||
Sbjct 168987 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 168928
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| || || || |||||| | || |||| | ||| || ||||||||
Sbjct 168927 ATCCAGAAAGATTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 168880
>seq18093
Length=33488
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || |||| |||||| | || || || || ||||| ||
Sbjct 3026 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2967
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || || || || || || ||||||||||| || || || ||
Sbjct 2966 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAG 2907
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || |||||||| ||||||| | || |||| |||||||||
Sbjct 2906 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCACACTCTTTCTGATTACAAC 2847
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| || || ||||| ||| | || |||| | ||| || | ||||||
Sbjct 2846 ATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTGAGAGGTGGC 2799
>seq2543
Length=251032
Score = 93.3 bits (102), Expect = 4e-14
Identities = 157/226 (69%), Gaps = 1/226 (0%)
Strand=Plus/Minus
Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049
|||||| || | || || ||||| |||||| | || || || || ||||| || ||
Sbjct 121806 GCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGCCCAGTGA 121747
Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109
| | || ||| || || || || || || || |||||||| || ||||| || ||
Sbjct 121746 CACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCC-CCCGACCAGCA 121688
Query 27110 GCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACAT 27169
| | | || | || |||||||| |||||||| | | || |||| |||||||||||
Sbjct 121687 GAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCTGCACTATTTCTGATTACAACAT 121628
Query 27170 TCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| || ||||| ||| | || |||| | ||| | ||||||||
Sbjct 121627 CCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTAAGGGGTGGC 121582
>seq3456
Length=207676
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || |||||||||||| | || || || || ||||| ||||
Sbjct 50772 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA---GTCC 50716
Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
||| | || |||| || || || || || || || |||||||| || || |
Sbjct 50715 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGTC 50656
Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164
|| ||| | | || | || |||||||| ||||||| | | || |||| ||||||
Sbjct 50655 CAGCAGAGGCTTATCTTTGCAGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTAC 50596
Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|||| || || | ||| || | || |||| | ||| || ||||||||
Sbjct 50595 GACATCCAGAAAGGGTCAACACTGCACCTGGTCCTCCGTCTGAGGGGTGGC 50545
>seq17051
Length=38469
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| || ||| | || ||||| || || ||||| ||
Sbjct 11247 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 11306
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || || || ||||| ||||| || || | ||| |
Sbjct 11307 GATACAATGGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGACCGG 11366
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | || ||||| ||| ||||||| | || | || || ||||||
Sbjct 11367 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 11426
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|||||||||||||| || | ||| | || ||| | | || ||||||
Sbjct 11427 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGC 11474
>seq561
Length=508305
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| || ||| | || ||||| || || ||||| | |
Sbjct 125670 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTGC 125729
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || || || ||||| ||||| || || || || ||
Sbjct 125730 GATACAATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 125789
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| | | || | || ||||| ||| ||||||| | || | || || ||||||
Sbjct 125790 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 125849
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||||||||||| || | ||| | || ||| | | || |||||
Sbjct 125850 ATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 125896
>seq3799
Length=195891
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| ||| | || ||||||||||| || || ||||| ||| | | || | || ||||||
Sbjct 103581 AAGATTGAGGATAAAGAAGGCATCCCCCCTGATCAGCAGAGGCTCATCTTTGCAGGCAAA 103640
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| |||||||| | || |||| ||||||| ||| || || ||||||||| | ||
Sbjct 103641 CAGCTGGAAGACGGCCGCACTCTTTCTGATTACAGCATCCAGAAAGAGTCGACCCTGCAC 103700
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGC 27215
|||| | ||| || ||||||||
Sbjct 103701 CTGGTCCTCCGTCTGAGGGGTGGC 103724
>seq3805
Length=195799
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || | || || |||||| ||||| | || || | || ||||||||
Sbjct 70796 ATGCAGATCTTCATGAAGACCCTGACCTGCAAGACCATCACCCCGGAGGTGGAACCCAGT 70855
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | |||| || || || || || || ||||||||||| || || || ||
Sbjct 70856 GACACC---GAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAG 70912
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | | | || |||||||| ||||||| | | || |||| |||||||||
Sbjct 70913 CAGAGGCTCCTCTTTGCAGGCAAACAGATGGAAGATGGCTGCACTCTTTCTGATTACAAC 70972
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196
|| || || ||||||||| | || ||||
Sbjct 70973 ATCCAGAAAGAGTCGACCCTGCACCTGGT 71001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434607417034560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |