Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq17051 109 4e-19 seq10582 105 5e-18 seq561 100 2e-16 seq1014 95.1 8e-15 seq5560 89.7 3e-13 seq18093 86.0 4e-12 seq393 86.0 4e-12 >seq17051 Length=38469 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || ||||||||||| || || || Sbjct 11244 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 11303 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || ||||| ||||| | || | || Sbjct 11304 TCGGATACAATGGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGAC 11363 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 | || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 11364 CGGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 11423 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 11424 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 11461 >seq10582 Length=81843 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || ||||||||||| || || || Sbjct 38745 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 38686 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || | ||||| ||||| | || || || Sbjct 38685 TCGGATACAATAGAAAACGTAAAGGCCAAGGTCCAGGACAAGGAAGGAATTCCTCCTGAC 38626 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | || ||||| || ||| Sbjct 38625 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 38566 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||| ||| | ||| | || || || Sbjct 38565 AACATTCAAAAGGAGTTCACGCTTCATCTTGTGTTGAG 38528 >seq561 Length=508305 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| || || || || ||||||||||| || || || Sbjct 125667 AATATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCC 125726 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 || || | |||| |||| || || ||||| ||||| | || || || Sbjct 125727 TGCGATACAATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 125786 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 125787 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 125846 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||| ||| | ||| | || || || Sbjct 125847 AACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAG 125884 >seq1014 Length=401283 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | ||||| || || |||||||| || || || ||| Sbjct 41719 ATGCAGATCTTAGTGAAGACCTTGACGGGCAAGACCATCACTCTAGAGGTCGAGCCCAGT 41660 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | |||| | ||||| || || | || || || || Sbjct 41659 GACACCATTGAGAATGTCAAAGCTAAAA-TCCAAGACAAGGAGGGCATCCCACCTGACCA 41601 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || |||||||| ||||| || | |||||| | || || || Sbjct 41600 GCAGCGTCTGATTTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTATAA 41541 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 || || ||||||||||| | || || || | | ||||||| || |||| Sbjct 41540 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTGCGAGGTGGCATCA 41488 >seq5560 Length=149305 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || ||||| || || | ||||||||||| ||||| || Sbjct 93192 AATATGCAGATTTTCTTGAAGACCCTGACAGGGATGGGCATCACTCTCGAGGTTGAACCC 93251 Query 23668 ACGGACACTGTTGAAATAT-TAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| | | |||| || |||| || | ||||| ||||| | || || || Sbjct 93252 TCGGATGCAATAGAAAAATGTAAAGGCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTGA 93311 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || || Sbjct 93312 CCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 93371 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| ||||| ||||| || Sbjct 93372 CAACATTCAAAAGGAGTCTAC 93392 >seq18093 Length=33488 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||| | || || || || ||||| || || || || || Sbjct 3029 AAAATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 2970 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || |||||||| | || || || Sbjct 2969 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGAC 2910 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| |||||||| |||||||| | | |||| | |||||| Sbjct 2909 CAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCACACTCTTTCTGATTAC 2850 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 2849 AACATCCAGAAAGAGTCTAC 2830 >seq393 Length=578971 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| || || || || ||||| || || || || || Sbjct 169110 AAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 169051 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | || || ||||| | || || || Sbjct 169050 AGTGACACCATCGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATCCCCCCTGA 168992 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| |||||||| |||||||| | |||||| | ||||| Sbjct 168991 CCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTA 168932 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||| || || Sbjct 168931 CAACATCCAGAAAGATTCGAC 168911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337773952699124