Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq17051 158 3e-33 seq561 149 1e-30 seq10582 141 2e-28 seq393 131 4e-25 seq1641 129 1e-24 seq18093 127 5e-24 seq2543 127 5e-24 seq5560 125 2e-23 seq1014 120 7e-22 seq3456 116 9e-21 seq25372 113 1e-19 seq25264 91.5 4e-13 seq3330 87.8 4e-12 seq1472 87.8 4e-12 seq11467 86.0 1e-11 >seq17051 Length=38469 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || |||||||| || ||||| | ||||| || | |||||| Sbjct 11468 ACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 11409 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| ||||| ||||| |||| ||| ||||| | ||||| || Sbjct 11408 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCC 11349 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| || ||| || || || |||| ||| || || | Sbjct 11348 TTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAG 11289 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||||| || || | ||| | ||||| || Sbjct 11288 AGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 11244 >seq561 Length=508305 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || |||||| | || ||||| | ||||| || | |||||| Sbjct 125891 ACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGT 125832 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| ||||| ||||| |||| ||| ||||| || ||||| || Sbjct 125831 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCC 125772 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| || ||| || || || ||| ||| || || | Sbjct 125771 TTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACCTCGAG 125712 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || |||| || || | ||| | ||||| || Sbjct 125711 AGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667 >seq10582 Length=81843 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 ||||||||| ||||| || || ||| | || ||||| | ||||| || | |||||| Sbjct 38523 GAAGTCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTAT 38582 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||| || ||||| ||||| ||||| |||| ||| ||||| || ||||| |||| Sbjct 38583 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 38642 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 ||||||| |||| ||| ||| || ||| || || || |||| ||| || || | | Sbjct 38643 CCTTGTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAG 38702 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||| ||||| ||||||| || || | ||| | ||||| || Sbjct 38703 TGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 38745 >seq393 Length=578971 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||| Sbjct 168896 AGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 168955 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| || | || ||||| || || || |||||||| || Sbjct 168956 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 169015 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 169016 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169075 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | || | |||||||| Sbjct 169076 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 169110 >seq1641 Length=318101 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||||||||| | | ||||| || || ||||| || ||||||||| | ||||| Sbjct 74879 CCAAATTTACAACGTGGTAGTAACGGCCCACGCATTTGTAATAATTTTCTTTATAGTTAT 74938 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || ||||| || ||||| || | || || ||||| ||||| || || | Sbjct 74939 ACCCATTATAATTGGCGGGTTTGGAAACTGGCTAGTACCCTTAATAATTGGGGCGCCCAA 74998 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTC 7729 |||||||||||| | | |||||||| ||||| |||||||| |||||||| |||| Sbjct 74999 TATGGCTTTTCCCCGTATAAACAATATGAGTTTCTGATTACT----CCTTCCTTCTTTC 75053 >seq18093 Length=33488 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | ||| |||||| Sbjct 2815 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCT 2874 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| || | || ||||| || || || ||||| || || Sbjct 2875 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCC 2934 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 2935 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2994 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || || | ||| | |||||||| Sbjct 2995 TTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 3029 >seq2543 Length=251032 Score = 127 bits (140), Expect = 5e-24 Identities = 143/190 (75%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | ||| | || ||| Sbjct 121598 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCT 121657 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| || | || |||||||| ||| | |||||||| || Sbjct 121658 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA-TGCCTTCCTTATCC 121716 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| | ||||||||| || ||||| || | |||||| ||| Sbjct 121717 TGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTC 121776 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 121777 TTGCCCGTCA 121786 >seq5560 Length=149305 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 ||||||||| ||||| || ||||| || || ||||| | ||||| || | |||||| | Sbjct 93415 GAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 93356 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||| || ||||| ||||| ||||| |||| ||| ||||| || ||||| |||| Sbjct 93355 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 93296 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACA-GCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||| ||| |||| ||| ||| ||| || | || |||| ||| || || | Sbjct 93295 CCTTGTCCTGGCTCTTGGCCTTTACATTTTTCTATTGCATCCGAGGGTTCAACCTCGAGA 93236 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| | | || |||| || || | ||| | ||||| || Sbjct 93235 GTGATGCCCATCCCTGTCAGGGTCTTCAAGAAAATCTGCATATT 93192 >seq1014 Length=401283 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||||| |||| ||| || || | || ||| | ||||| Sbjct 41508 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTGCGGCCATCC 41567 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || ||||| || || || || ||||| || || || || ||||||||| Sbjct 41568 TCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 41627 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| || |||||||| || || || |||| ||||| || Sbjct 41628 TGGAT-TTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGAGTGATGGT 41686 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||||||||| || || Sbjct 41687 CTTGCCCGTCAAGGTCTT 41704 >seq3456 Length=207676 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || |||| |||| | |||||| | | ||| | |||||| Sbjct 50561 AGGACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATCAGAAAGAGTGCAGCCATCT 50620 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || |||||||| | || ||| | || || || |||||||| || Sbjct 50621 TCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGGGGGGATGCCTTCCTTATCC 50680 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 50681 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTC 50740 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 50741 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 50772 >seq25372 Length=10183 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| | ||| || |||||||| || ||||| ||||| || | |||||| Sbjct 9289 ACGAAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTTGTAGTCAGACAAAGT 9230 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| ||||| || || | || ||| |||| | ||||| | Sbjct 9229 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTTTGCTGGTTAGAAGGAATTAC 9170 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||||||||| || ||| ||| | || || |||| ||| || || | Sbjct 9169 ATCCTTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCCAG 9110 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| ||||| || |||| Sbjct 9109 AGTGATGGTCTTCCCTGTCA 9090 >seq25264 Length=10399 Score = 91.5 bits (100), Expect = 4e-13 Identities = 121/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 225546 CAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGG 225605 |||||| | |||||||| || ||||| ||||| ||||| |||| ||| ||||| || | Sbjct 6715 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGA 6774 Query 225606 AATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCAC 225665 ||| ||||||||||| |||||||| ||| ||| ||| | || || ||| || || Sbjct 6775 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCAAGGGCTCAAC 6834 Query 225666 GTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 | | ||||| ||||| || |||| || || | ||| | |||| Sbjct 6835 CTTGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCACGAAAATCTGCA 6880 >seq3330 Length=212373 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || || | || ||| ||| |||||||||||||| ||||||| Sbjct 193660 CACTTCAGTACCTGGCTCCTTATTCTGGATGTTCTATGGGAGAATATTTTAGGGATAATG 193719 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| ||||| || || || ||| ||||| |||| Sbjct 193720 GCAAACATGCTTTGATCATTTATGACGACTTATCCAAACAGGTCAA 193765 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 4453 TTAATCAAAAATATTGTGAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATA 4512 ||||||||||| |||| || || ||||| || || || ||||| || || || Sbjct 194111 TTAATCAAAAACC-----AATACCTGTCCGTCAGTGATGGAAATGACATTCGTTGGAATG 194057 Query 4513 TAAGCAGAAACATCACCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCA 4572 |||||||| |||||||| ||||||||||| | || ||||| || || | || |||||| Sbjct 194056 TAAGCAGACACATCACCAGCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCA 193997 Query 4573 CCAAAA 4578 |||||| Sbjct 193996 CCAAAA 193991 >seq1472 Length=336228 Score = 87.8 bits (96), Expect = 4e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| ||||| ||||| |||||||||||||| ||||| || || ||||| | Sbjct 254539 ATATTTCGGGATGTCCAAAGAATCAAAATAAATGTTGATATAGGATTGGGTCTCCTCCTC 254480 Query 370728 CTGATGGATCAAAAAAGCTAGTA-TTAAAATTTCTATCAGTTA 370769 ||| || ||||| || | ||| || ||||||| ||| |||| Sbjct 254479 CTGCAGGGTCAAAGAAAGTTGTACTTTAAATTTCGATCGGTTA 254437 >seq11467 Length=73968 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 7573 ACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTC 7632 || || ||||| ||||| || |||||||| || || || | || || || || ||| Sbjct 58591 ACAGCCCATGCGTTTGTAATATTTTTCTTTACAGTCATCCCCATCATAATTGGTGGCTTC 58650 Query 7633 GGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAAC 7692 ||||| || | || ||| ||||||| | || ||||||||||||| || | | || Sbjct 58651 GGAAACTGGCTGGTGCCTCTAATGATCAGAGCATCTGATATGGCTTTCCCCTGTGTAAAT 58710 Query 7693 AATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || || ||||||||| |||| || ||||| || || Sbjct 58711 AACATGAGTTTTTGACTACTCCCTCCTTCTTTCTT 58745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191657177858882