Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq17051 158 3e-33
seq561 149 1e-30
seq10582 141 2e-28
seq393 131 4e-25
seq1641 129 1e-24
seq18093 127 5e-24
seq2543 127 5e-24
seq5560 125 2e-23
seq1014 120 7e-22
seq3456 116 9e-21
seq25372 113 1e-19
seq25264 91.5 4e-13
seq3330 87.8 4e-12
seq1472 87.8 4e-12
seq11467 86.0 1e-11
>seq17051
Length=38469
Score = 158 bits (174), Expect = 3e-33
Identities = 170/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||||||||| ||||| || |||||||| || ||||| | ||||| || | ||||||
Sbjct 11468 ACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 11409
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| || ||||| ||||| ||||| |||| ||| ||||| | ||||| ||
Sbjct 11408 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCC 11349
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||| |||||||| ||| || ||| || || || |||| ||| || || |
Sbjct 11348 TTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAG 11289
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| ||||| ||||||| || || | ||| | ||||| ||
Sbjct 11288 AGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 11244
>seq561
Length=508305
Score = 149 bits (164), Expect = 1e-30
Identities = 168/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||||||||| ||||| || |||||| | || ||||| | ||||| || | ||||||
Sbjct 125891 ACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGT 125832
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| || ||||| ||||| ||||| |||| ||| ||||| || ||||| ||
Sbjct 125831 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCC 125772
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||| |||||||| ||| || ||| || || || ||| ||| || || |
Sbjct 125771 TTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACCTCGAG 125712
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| ||||| || |||| || || | ||| | ||||| ||
Sbjct 125711 AGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667
>seq10582
Length=81843
Score = 141 bits (156), Expect = 2e-28
Identities = 165/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553
||||||||| ||||| || || ||| | || ||||| | ||||| || | ||||||
Sbjct 38523 GAAGTCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTAT 38582
Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613
|||||||| || ||||| ||||| ||||| |||| ||| ||||| || ||||| ||||
Sbjct 38583 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 38642
Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673
||||||| |||| ||| ||| || ||| || || || |||| ||| || || | |
Sbjct 38643 CCTTGTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAG 38702
Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|||| ||||| ||||||| || || | ||| | ||||| ||
Sbjct 38703 TGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 38745
>seq393
Length=578971
Score = 131 bits (144), Expect = 4e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| || || || ||||| |||| |||||||| | | ||| | ||||||
Sbjct 168896 AGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 168955
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || || ||||| || | || ||||| || || || |||||||| ||
Sbjct 168956 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 169015
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||||||||| || ||||| || | ||||| |||
Sbjct 169016 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 169075
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| |||| || || | || | ||||||||
Sbjct 169076 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 169110
>seq1641
Length=318101
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| |||||||||| | | ||||| || || ||||| || ||||||||| | |||||
Sbjct 74879 CCAAATTTACAACGTGGTAGTAACGGCCCACGCATTTGTAATAATTTTCTTTATAGTTAT 74938
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
|| |||| || ||||| || ||||| || | || || ||||| ||||| || || |
Sbjct 74939 ACCCATTATAATTGGCGGGTTTGGAAACTGGCTAGTACCCTTAATAATTGGGGCGCCCAA 74998
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTC 7729
|||||||||||| | | |||||||| ||||| |||||||| |||||||| ||||
Sbjct 74999 TATGGCTTTTCCCCGTATAAACAATATGAGTTTCTGATTACT----CCTTCCTTCTTTC 75053
>seq18093
Length=33488
Score = 127 bits (140), Expect = 5e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| || || || ||||| |||| |||||||| | | ||| ||||||
Sbjct 2815 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCT 2874
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || || ||||| || | || ||||| || || || ||||| || ||
Sbjct 2875 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCC 2934
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| ||||||||||| || ||||| || | ||||| |||
Sbjct 2935 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2994
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| ||||| || || | ||| | ||||||||
Sbjct 2995 TTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 3029
>seq2543
Length=251032
Score = 127 bits (140), Expect = 5e-24
Identities = 143/190 (75%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| || || || ||||| |||| |||||||| | | ||| | || |||
Sbjct 121598 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCT 121657
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || || ||||| || | || |||||||| ||| | |||||||| ||
Sbjct 121658 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA-TGCCTTCCTTATCC 121716
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| | ||||||||| || ||||| || | |||||| |||
Sbjct 121717 TGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTC 121776
Query 225682 TTGCCCGTCA 225691
||||||||||
Sbjct 121777 TTGCCCGTCA 121786
>seq5560
Length=149305
Score = 125 bits (138), Expect = 2e-23
Identities = 163/224 (73%), Gaps = 1/224 (0%)
Strand=Plus/Minus
Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553
||||||||| ||||| || ||||| || || ||||| | ||||| || | |||||| |
Sbjct 93415 GAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 93356
Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613
|||||||| || ||||| ||||| ||||| |||| ||| ||||| || ||||| ||||
Sbjct 93355 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 93296
Query 225614 CCTTGTCTTGGATCTTTTGCTTCACA-GCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||| ||| |||| ||| ||| ||| || | || |||| ||| || || |
Sbjct 93295 CCTTGTCCTGGCTCTTGGCCTTTACATTTTTCTATTGCATCCGAGGGTTCAACCTCGAGA 93236
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| | | || |||| || || | ||| | ||||| ||
Sbjct 93235 GTGATGCCCATCCCTGTCAGGGTCTTCAAGAAAATCTGCATATT 93192
>seq1014
Length=401283
Score = 120 bits (132), Expect = 7e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || ||||| ||||| |||| ||| || || | || ||| | |||||
Sbjct 41508 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTGCGGCCATCC 41567
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || ||||| || || || || ||||| || || || || |||||||||
Sbjct 41568 TCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 41627
Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||| ||| || || ||| || |||||||| || || || |||| ||||| ||
Sbjct 41628 TGGAT-TTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGAGTGATGGT 41686
Query 225681 CTTGCCCGTCAAAGTTTT 225698
|||||||||||| || ||
Sbjct 41687 CTTGCCCGTCAAGGTCTT 41704
>seq3456
Length=207676
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| || || || |||| |||| | |||||| | | ||| | ||||||
Sbjct 50561 AGGACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATCAGAAAGAGTGCAGCCATCT 50620
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || || |||||||| | || ||| | || || || |||||||| ||
Sbjct 50621 TCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGGGGGGATGCCTTCCTTATCC 50680
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| ||||||||||| || ||||| || | ||||| |||
Sbjct 50681 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTC 50740
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| || || | ||| | |||||
Sbjct 50741 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 50772
>seq25372
Length=10183
Score = 113 bits (124), Expect = 1e-19
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||||||||| | ||| || |||||||| || ||||| ||||| || | ||||||
Sbjct 9289 ACGAAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTTGTAGTCAGACAAAGT 9230
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| || ||||| ||||| || || | || ||| |||| | ||||| |
Sbjct 9229 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTTTGCTGGTTAGAAGGAATTAC 9170
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| ||||||||||| || ||| ||| | || || |||| ||| || || |
Sbjct 9169 ATCCTTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCCAG 9110
Query 225672 CGTGATCGTCTTGCCCGTCA 225691
||||| ||||| || ||||
Sbjct 9109 AGTGATGGTCTTCCCTGTCA 9090
>seq25264
Length=10399
Score = 91.5 bits (100), Expect = 4e-13
Identities = 121/167 (72%), Gaps = 1/167 (1%)
Strand=Plus/Plus
Query 225546 CAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGG 225605
|||||| | |||||||| || ||||| ||||| ||||| |||| ||| ||||| || |
Sbjct 6715 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGA 6774
Query 225606 AATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCAC 225665
||| ||||||||||| |||||||| ||| ||| ||| | || || ||| || ||
Sbjct 6775 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCAAGGGCTCAAC 6834
Query 225666 GTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712
| | ||||| ||||| || |||| || || | ||| | ||||
Sbjct 6835 CTTGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCACGAAAATCTGCA 6880
>seq3330
Length=212373
Score = 87.8 bits (96), Expect = 4e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076
||||||| ||||| || || || | || ||| ||| |||||||||||||| |||||||
Sbjct 193660 CACTTCAGTACCTGGCTCCTTATTCTGGATGTTCTATGGGAGAATATTTTAGGGATAATG 193719
Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122
| ||||||||||| ||||| || || || ||| ||||| ||||
Sbjct 193720 GCAAACATGCTTTGATCATTTATGACGACTTATCCAAACAGGTCAA 193765
Score = 87.8 bits (96), Expect = 4e-12
Identities = 95/126 (75%), Gaps = 5/126 (4%)
Strand=Plus/Minus
Query 4453 TTAATCAAAAATATTGTGAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATA 4512
||||||||||| |||| || || ||||| || || || ||||| || || ||
Sbjct 194111 TTAATCAAAAACC-----AATACCTGTCCGTCAGTGATGGAAATGACATTCGTTGGAATG 194057
Query 4513 TAAGCAGAAACATCACCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCA 4572
|||||||| |||||||| ||||||||||| | || ||||| || || | || ||||||
Sbjct 194056 TAAGCAGACACATCACCAGCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCA 193997
Query 4573 CCAAAA 4578
||||||
Sbjct 193996 CCAAAA 193991
>seq1472
Length=336228
Score = 87.8 bits (96), Expect = 4e-12
Identities = 82/103 (80%), Gaps = 1/103 (1%)
Strand=Plus/Minus
Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727
||| ||| ||||| ||||| ||||| |||||||||||||| ||||| || || ||||| |
Sbjct 254539 ATATTTCGGGATGTCCAAAGAATCAAAATAAATGTTGATATAGGATTGGGTCTCCTCCTC 254480
Query 370728 CTGATGGATCAAAAAAGCTAGTA-TTAAAATTTCTATCAGTTA 370769
||| || ||||| || | ||| || ||||||| ||| ||||
Sbjct 254479 CTGCAGGGTCAAAGAAAGTTGTACTTTAAATTTCGATCGGTTA 254437
>seq11467
Length=73968
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 7573 ACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTC 7632
|| || ||||| ||||| || |||||||| || || || | || || || || |||
Sbjct 58591 ACAGCCCATGCGTTTGTAATATTTTTCTTTACAGTCATCCCCATCATAATTGGTGGCTTC 58650
Query 7633 GGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAAC 7692
||||| || | || ||| ||||||| | || ||||||||||||| || | | ||
Sbjct 58651 GGAAACTGGCTGGTGCCTCTAATGATCAGAGCATCTGATATGGCTTTCCCCTGTGTAAAT 58710
Query 7693 AATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727
|| || ||||||||| |||| || ||||| || ||
Sbjct 58711 AACATGAGTTTTTGACTACTCCCTCCTTCTTTCTT 58745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191657177858882
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |