Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq18172 315 6e-81
seq15026 181 9e-41
seq293 163 2e-35
seq1907 98.7 8e-16
seq721 87.8 1e-12
seq17849 82.4 6e-11
>seq18172
Length=33122
Score = 315 bits (348), Expect = 6e-81
Identities = 526/770 (68%), Gaps = 5/770 (1%)
Strand=Plus/Minus
Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29587
|||||||| | |||||| || | || || || ||||| ||||| || | ||||
Sbjct 27562 GGGTGAGGATTGTAGCCTTCAATCTGAAAGTCTTCAGCCTTGAAGTCATCAATTTTCTCA 27503
Query 29588 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTC 29647
|| | | || || || |||| || || || || || | || |||||||| ||
Sbjct 27502 ACTTTTCGAAGGATTCTGAGCTTGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTC 27443
Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707
||||| || | ||| | ||||| | ||| |||||||||| ||||| ||||| || ||
Sbjct 27442 AGCGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCT 27383
Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767
|| | || | ||| ||| || |||||||| | || | ||||||||||||| |
Sbjct 27382 GGCTTCAGGCGCGTGGTGTGTGCGATCATGTA-----GCAGGGCGTAGCTGGCGATGYTG 27328
Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827
|||||||| | || |||||||| |||||||||||||| |||||||| || ||||| |||
Sbjct 27327 AAGGGCACACYCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCG 27268
Query 29828 TCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887
| |||||| ||||| || | ||| |||||||| || |||||||||||| | |||
Sbjct 27267 TTCACCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCT 27208
Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 29947
|| || ||||| ||||||| |||||| | ||||| || |||||| | |||| |||
Sbjct 27207 TTCGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCA 27148
Query 29948 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNN 30007
| |||||||| ||||| || || | || || ||||
Sbjct 27147 GTCACTTTTTGCAGTTGATCTACTCCTTGATCTGAATAATCTGAATGCATATCTTTGTAT 27088
Query 30008 NNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30067
| |||||||||||||| || || || || || || | || || ||| | |||
Sbjct 27087 TCGGTCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTG 27028
Query 30068 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30127
||| ||| ||||||| ||||||| ||| || ||||| |||||||| || ||
Sbjct 27027 GTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACT 26968
Query 30128 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30187
||||| || ||||| || | ||||||||| || ||| |||||||||| |||||||
Sbjct 26967 CCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCC 26908
Query 30188 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCG 30247
|| |||| || || || | ||||| || || || ||||| | | | |||| |
Sbjct 26907 GAAACACCCTTGCAGAAAACACATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTG 26848
Query 30248 TACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297
|| | |||||| || |||| |||| | || ||||| || | |||
Sbjct 26847 TAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTC 26798
>seq15026
Length=49095
Score = 181 bits (200), Expect = 9e-41
Identities = 368/551 (67%), Gaps = 10/551 (2%)
Strand=Plus/Plus
Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695
||||| || ||||| | || | ||| || ||||| | ||| |||||||||| |||||
Sbjct 46639 AGCTGCATTTTCAGCAGCTCAATGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 46698
Query 29696 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29755
||| | || || || | || || |||| ||| || |||||||| ||||| || | |||
Sbjct 46699 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAG 46758
Query 29756 CTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCAC 29815
||||||| ||| |||| ||| || || ||| |||| |||||||||||||| |||| |||
Sbjct 46759 CTGGCGACGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACCTCTGGTACAGCT-GCAG 46817
Query 29816 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAG------- 29868
|| ||||| || |||||| || || || | |||||||||| | || ||
Sbjct 46818 GACAGCTCATGGTTCACCACGTAGAAGTGGCAAAAGGCATGGCACAGGGGCAGGGTGGCA 46877
Query 29869 GGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGG 29928
|| |||||| | ||||| | ||||| ||||| | ||||| | |||||||| ||
Sbjct 46878 GGGTATGAGAGGAAGATCTTT-TGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 46936
Query 29929 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA-GT 29987
|||| | |||| ||| | | |||||||| || || || || | || || |
Sbjct 46937 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTACTCCTTGACGTGAATACAT 46996
Query 29988 CTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30047
| | ||| |||||||||| || | || || || |
Sbjct 46997 TTAAATCCACATCTTTGTATTCAGCCACCAAAGGCCTCCACTGAAAGCTATAAACTGGGC 47056
Query 30048 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30107
| | || || ||||| ||| || || ||||||| ||||||| ||| ||||
Sbjct 47057 CTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCCGT 47116
Query 30108 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167
||| |||||||| || || ||||| || ||||| || | |||||||| || |||
Sbjct 47117 GGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGAGCCCTTGA 47176
Query 30168 CGAACCACAGC 30178
|||||||||
Sbjct 47177 TCAACCACAGC 47187
>seq293
Length=643942
Score = 163 bits (180), Expect = 2e-35
Identities = 135/165 (82%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||||
Sbjct 264058 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 263999
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| |||||||||||||| |||||||| || ||||| |||| |
Sbjct 263998 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 263939
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
| ||| ||||| || | ||| |||||||| || ||||||||||||
Sbjct 263938 ATGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGA 263894
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
|||||||||||||| || || || || || || | || || ||| | ||| |||
Sbjct 260770 AAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAAT 260711
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| ||||||| ||||||| ||| || ||||| |||||||| || || |||||
Sbjct 260710 CCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 260651
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| ||||| || | ||||||||| ||
Sbjct 260650 GACAGCTCCTTAGCGTTTGTGGATCC 260625
>seq1907
Length=295643
Score = 98.7 bits (108), Expect = 8e-16
Identities = 115/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || || ||||| |||| || | ||||| |
Sbjct 59916 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 59857
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| || || |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 59856 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 59797
Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCA 114413
||| ||||| |||| | ||||| || | |||||
Sbjct 59796 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 59765
>seq721
Length=458371
Score = 87.8 bits (96), Expect = 1e-12
Identities = 176/259 (68%), Gaps = 8/259 (3%)
Strand=Plus/Minus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || || ||||| |||| || | ||| | |
Sbjct 192700 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGCCCTT 192641
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || || ||||||||||| || || |||||||| |||||| ||
Sbjct 192640 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATT 192581
Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441
||| |||||| | ||||| || | ||||| | | || | | | || ||
Sbjct 192580 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATT--- 192524
Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 114500
|| | ||| |||| ||||| || ||||| || || |||||| || ||||| ||
Sbjct 192523 ---CCTGAGCGGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCGTGTTCTGG-GACA 192468
Query 114501 CTGCCACGATACCGTTCAG 114519
| || ||||| | ||| ||
Sbjct 192467 CAGCGACGATGCAGTTTAG 192449
>seq17849
Length=34736
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || || ||||| |||| || | ||||| | | ||||| |||||| || ||
Sbjct 9034 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9093
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || || |||||||| ||||||| ||||| ||||||
Sbjct 9094 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405880038628858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |