Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq18172 315 6e-81 seq15026 181 9e-41 seq293 163 2e-35 seq1907 98.7 8e-16 seq721 87.8 1e-12 seq17849 82.4 6e-11 >seq18172 Length=33122 Score = 315 bits (348), Expect = 6e-81 Identities = 526/770 (68%), Gaps = 5/770 (1%) Strand=Plus/Minus Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29587 |||||||| | |||||| || | || || || ||||| ||||| || | |||| Sbjct 27562 GGGTGAGGATTGTAGCCTTCAATCTGAAAGTCTTCAGCCTTGAAGTCATCAATTTTCTCA 27503 Query 29588 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTC 29647 || | | || || || |||| || || || || || | || |||||||| || Sbjct 27502 ACTTTTCGAAGGATTCTGAGCTTGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTC 27443 Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || | ||| | ||||| | ||| |||||||||| ||||| ||||| || || Sbjct 27442 AGCGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCT 27383 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || | ||| ||| || |||||||| | || | ||||||||||||| | Sbjct 27382 GGCTTCAGGCGCGTGGTGTGTGCGATCATGTA-----GCAGGGCGTAGCTGGCGATGYTG 27328 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 |||||||| | || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 27327 AAGGGCACACYCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCG 27268 Query 29828 TCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887 | |||||| ||||| || | ||| |||||||| || |||||||||||| | ||| Sbjct 27267 TTCACCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCT 27208 Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 29947 || || ||||| ||||||| |||||| | ||||| || |||||| | |||| ||| Sbjct 27207 TTCGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCA 27148 Query 29948 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNN 30007 | |||||||| ||||| || || | || || |||| Sbjct 27147 GTCACTTTTTGCAGTTGATCTACTCCTTGATCTGAATAATCTGAATGCATATCTTTGTAT 27088 Query 30008 NNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30067 | |||||||||||||| || || || || || || | || || ||| | ||| Sbjct 27087 TCGGTCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTG 27028 Query 30068 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30127 ||| ||| ||||||| ||||||| ||| || ||||| |||||||| || || Sbjct 27027 GTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACT 26968 Query 30128 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30187 ||||| || ||||| || | ||||||||| || ||| |||||||||| ||||||| Sbjct 26967 CCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCC 26908 Query 30188 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCG 30247 || |||| || || || | ||||| || || || ||||| | | | |||| | Sbjct 26907 GAAACACCCTTGCAGAAAACACATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTG 26848 Query 30248 TACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 || | |||||| || |||| |||| | || ||||| || | ||| Sbjct 26847 TAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTC 26798 >seq15026 Length=49095 Score = 181 bits (200), Expect = 9e-41 Identities = 368/551 (67%), Gaps = 10/551 (2%) Strand=Plus/Plus Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695 ||||| || ||||| | || | ||| || ||||| | ||| |||||||||| ||||| Sbjct 46639 AGCTGCATTTTCAGCAGCTCAATGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 46698 Query 29696 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29755 ||| | || || || | || || |||| ||| || |||||||| ||||| || | ||| Sbjct 46699 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAG 46758 Query 29756 CTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCAC 29815 ||||||| ||| |||| ||| || || ||| |||| |||||||||||||| |||| ||| Sbjct 46759 CTGGCGACGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACCTCTGGTACAGCT-GCAG 46817 Query 29816 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAG------- 29868 || ||||| || |||||| || || || | |||||||||| | || || Sbjct 46818 GACAGCTCATGGTTCACCACGTAGAAGTGGCAAAAGGCATGGCACAGGGGCAGGGTGGCA 46877 Query 29869 GGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGG 29928 || |||||| | ||||| | ||||| ||||| | ||||| | |||||||| || Sbjct 46878 GGGTATGAGAGGAAGATCTTT-TGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 46936 Query 29929 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA-GT 29987 |||| | |||| ||| | | |||||||| || || || || | || || | Sbjct 46937 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTACTCCTTGACGTGAATACAT 46996 Query 29988 CTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30047 | | ||| |||||||||| || | || || || | Sbjct 46997 TTAAATCCACATCTTTGTATTCAGCCACCAAAGGCCTCCACTGAAAGCTATAAACTGGGC 47056 Query 30048 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30107 | | || || ||||| ||| || || ||||||| ||||||| ||| |||| Sbjct 47057 CTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCCGT 47116 Query 30108 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167 ||| |||||||| || || ||||| || ||||| || | |||||||| || ||| Sbjct 47117 GGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGAGCCCTTGA 47176 Query 30168 CGAACCACAGC 30178 ||||||||| Sbjct 47177 TCAACCACAGC 47187 >seq293 Length=643942 Score = 163 bits (180), Expect = 2e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 264058 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 263999 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||||| |||||||| || ||||| |||| | Sbjct 263998 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 263939 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 | ||| ||||| || | ||| |||||||| || |||||||||||| Sbjct 263938 ATGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAGA 263894 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || || || || || || | || || ||| | ||| ||| Sbjct 260770 AAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAAT 260711 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||||| ||| || ||||| |||||||| || || ||||| Sbjct 260710 CCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 260651 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| || | ||||||||| || Sbjct 260650 GACAGCTCCTTAGCGTTTGTGGATCC 260625 >seq1907 Length=295643 Score = 98.7 bits (108), Expect = 8e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 59916 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 59857 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | || || |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 59856 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 59797 Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCA 114413 ||| ||||| |||| | ||||| || | ||||| Sbjct 59796 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 59765 >seq721 Length=458371 Score = 87.8 bits (96), Expect = 1e-12 Identities = 176/259 (68%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||| | | Sbjct 192700 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGCCCTT 192641 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| || || |||||||| |||||| || Sbjct 192640 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATT 192581 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| |||||| | ||||| || | ||||| | | || | | | || || Sbjct 192580 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATT--- 192524 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 114500 || | ||| |||| ||||| || ||||| || || |||||| || ||||| || Sbjct 192523 ---CCTGAGCGGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCGTGTTCTGG-GACA 192468 Query 114501 CTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 192467 CAGCGACGATGCAGTTTAG 192449 >seq17849 Length=34736 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 9034 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9093 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || |||||||| ||||||| ||||| |||||| Sbjct 9094 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405880038628858