Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1525 226 2e-54 seq25410 165 7e-36 seq36034 161 8e-35 seq7076 140 3e-28 seq3798 116 3e-21 seq549 116 3e-21 seq27717 114 1e-20 seq1670 98.7 8e-16 >seq1525 Length=329219 Score = 226 bits (250), Expect = 2e-54 Identities = 517/765 (68%), Gaps = 20/765 (3%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||||| ||| || ||||| ||||| || ||||| | |||||||| ||| Sbjct 305163 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCC 305104 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTT-TCACACTTTAGAGCTACA--AGC 4376 ||||| ||||| ||||| | | | || || | | || |||| || | Sbjct 305103 ATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAACCC---AGCTCCAGCATA 305047 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | || ||| || | |||| || ||||| |||| | | || || || || || | Sbjct 305046 AGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCATCCCGATGAGC 304987 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGT-GATTAT 4495 |||| | | || | || | ||| ||||||| | || || ||| |||||| Sbjct 304986 TTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCA-CTGACGATTAT 304928 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 ||||| | | | | | || ||||| | || | || | |||| | || ||||| Sbjct 304927 TTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAA 304868 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||||| || ||||| |||||||||||||| ||||| || ||||| || | |||||||| Sbjct 304867 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCAT 304808 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | |||| || || ||||| ||||| | ||||| || ||||||||||| |||||||| Sbjct 304807 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 304748 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATT 4734 || |||||||| |||| | || || ||| ||| || |||| | ||||| Sbjct 304747 CACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGC-CTCTGTGTCCTCGATCCAGC 304689 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--- 4791 || ||||| | || || ||||| || || || ||||| | || ||||| || | Sbjct 304688 GCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAG 304629 Query 4792 ATTTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 ||| |||| || ||| |||| || |||||||| | || || ||||||||||| Sbjct 304628 ATTCCCTTTCTT----TGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATACATTTCC 304573 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTG 4909 |||||||| ||||| || ||||| || || || || ||| || | ||||| || | || Sbjct 304572 GAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCA-CGGGCTTCCGTCATCTG 304514 Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 | |||| | | || | || || | |||||| ||||||| || ||||| |||||| | Sbjct 304513 AGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGCTGCAGA 304454 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAG 5014 || |||| ||||| || || || | || |||||||| || Sbjct 304453 GAAAGCCAGGACATGCGAAATGAAATGTCTCTCCTCAGGCTTCAG 304409 >seq25410 Length=10104 Score = 165 bits (182), Expect = 7e-36 Identities = 214/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 || ||||||||||||||||| || ||||| || ||||| || || || || || || Sbjct 10102 AGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGG 10043 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 ||||| || | |||||||| | | ||| | || || ||| |||| |||||||| || Sbjct 10042 GCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCA 9983 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 ||||| |||||||| || |||| |||||| || || || || || |||||||| || Sbjct 9982 TCACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGG 9923 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 || |||||| | | || || | | || || |||||| | |||||||| || || Sbjct 9922 GCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCC 9863 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || ||||| || ||||| |||||||||| | || | || |||| |||||||| Sbjct 9862 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807 >seq36034 Length=1448 Score = 161 bits (178), Expect = 8e-35 Identities = 360/534 (67%), Gaps = 11/534 (2%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||||| ||| || |||| ||||| || ||||| | |||||||| || Sbjct 547 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCCCC 488 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTT-TCACACTTTAGAGCTACA--AGC 4376 ||||| ||||| ||||| | | || || || | | || |||| || | Sbjct 487 ATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCC---AGCTCCAGCATA 431 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | || ||| || |||||||| || ||||| |||| | ||| || || ||||| | Sbjct 430 AGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGC 371 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 |||| || || || | || | ||||| |||||||| | || || | |||||| Sbjct 370 TTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATT 311 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556 ||||| | | | | | || ||||| | || | || | |||| | || ||||| Sbjct 310 TCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAG 251 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 ||||| || ||||| |||||||||||||| ||||| || ||||| || | | |||||| Sbjct 250 TCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCTGGGCATC 191 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 | ||||| ||||| ||||| ||||| | ||||| || ||||||||| || ||||| Sbjct 190 AGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG---ATTCCTTCC 134 Query 4677 ACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTT 4735 || || |||| ||| | | || || ||| ||| ||||||| ||||| Sbjct 133 ACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGC-CTCTTTGTCCCCGATCCAGCA 75 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 || ||||| | | || ||||| || || || ||||| | |||||||| || Sbjct 74 CAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAA 21 >seq7076 Length=122421 Score = 140 bits (154), Expect = 3e-28 Identities = 274/401 (68%), Gaps = 7/401 (2%) Strand=Plus/Plus Query 31673 GAACATGCTACGGTTCCTACAAAAGGATCAGAGGGTTCTGCGGGATATGATTTATATAGC 31732 || || || || | ||| || | || || ||| || | ||||| ||||| |||| || Sbjct 32151 GAGCACGCCACCGCTCCGACCAGGGGGTCCGAGCGTGCCGCGGGCTATGACCTATACAGT 32210 Query 31733 GCCTACGACTATGTGGTAGAGGCAAAATCTAGAGCGCTAGTTAAAACCGATATTCAAATT 31792 ||||| || || ||| | | | ||| || || ||||| || ||||| || Sbjct 32211 GCCTATGATTACACAGTACCACCTATGGAGAAAGCCCTTGTGAAAACAGACATTCAGATA 32270 Query 31793 TCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACAC 31852 || | ||||| |||||||| || || ||||||| | ||||| ||||| | |||||| Sbjct 32271 GCTCTTCCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACAC 32330 Query 31853 TTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTG 31912 || || || || || || ||||| |||||| ||| ||||||||||| ||||| |||| Sbjct 32331 TTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTA 32390 Query 31913 TTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAAAAGGGCGATAGGGTAGCTCAA 31969 ||||||||||||| |||||| | | || | |||||||| ||| | | || || Sbjct 32391 CTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TCAAAAAGGGTGATCGAATTGCCCAG 32447 Query 31970 CTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGTAGCTAATTATCTAGATTGCACG 32029 || ||||| ||| ||| || ||||||| | || | | | ||||| ||| Sbjct 32448 CTCATTTGTGAACGGATATTTTACCCAGAAATAGAGGAAGTTCAAGTTTTAGATGACACT 32507 Query 32030 AAAAGAGGCGCTAAAGGCTTTGGATCTACCGGAAATTAATT 32070 |||| || | ||| ||||| || || ||||| ||||| Sbjct 32508 GAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAAA-TAATT 32547 >seq3798 Length=195893 Score = 116 bits (128), Expect = 3e-21 Identities = 162/222 (73%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAAT--TTCTTTACCTTCAGGGTGCTACGGACGAATA 31822 ||| || || |||||||| ||||| || ||||| ||||| |||||||| || || || Sbjct 80349 AGCCCTTGTGAAAACCGACATTCAGATACTTCTT--CCTTCTGGGTGCTATGGGAGAGTA 80292 Query 31823 GCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGAT 31882 ||||| | ||| | ||||| | |||||||| || || || | || ||||| |||||| Sbjct 80291 GCTCCATGTTCTAGCTTGGCTGCAAAACACTTCATAGATGTAGAAGCTGGTGTCATAGAT 80232 Query 31883 TCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATAC 31939 ||| ||||||||||| ||||| |||| | ||||||| ||| |||||| | | Sbjct 80231 GAAGATTATAGAGGAAATGTTGGTGTTGTACTATTTAATTGTGGCAAAGAAAAGT-TTGA 80173 Query 31940 AGTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || |||||||| | |||| | || || || ||||| ||| Sbjct 80172 AG--TAAAAAAGTGTGATAAAATTGCACAGCTCATTTGTGAA 80133 >seq549 Length=511996 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || ||||| || | |||||||| | ||||| ||||| Sbjct 260457 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 260516 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| ||| Sbjct 260517 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 260576 Query 4692 AC 4693 || Sbjct 260577 AC 260578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || ||||||||||||||||| || ||||| || ||| Sbjct 262452 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGCA 262511 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||||| || | |||||||| Sbjct 262512 ATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTC 262555 >seq27717 Length=6327 Score = 114 bits (126), Expect = 1e-20 Identities = 193/275 (70%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 31799 CCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATC 31858 ||||| |||||||| || || ||||||| | ||||| ||||| | |||||||| || Sbjct 4135 CCTTCTGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCATA 4194 Query 31859 GACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTT 31918 || || || || ||||| ||||| ||| ||||||||||| ||||| |||| ||||| Sbjct 4195 GATGTAGGAGCTGGTGTCGTAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTT 4254 Query 31919 AATTTTGG---AGAAAAATCATACAGTATAAAAAAGGGCGATAGGGTAGCTCAACTAATT 31975 |||||||| |||||| | | || | |||||||| ||| | | || || || ||| Sbjct 4255 AATTTTGGCAAAGAAAAGT-TTGAAG--TCAAAAAGGGTGATCGAATTGCCCAGCTCATT 4311 Query 31976 TGCGAAAAAATAGAAATGCCCCAAATAGAAGTAGCTAATTATCTAGATTGCACGAAAAGA 32035 || ||| ||| || ||||||| | || | | | ||||| ||| |||| Sbjct 4312 TGTGAACGGATATTTTACCCAGAAATAGAGGAAGTTCAAGTTTTAGATGACACTGAAAGG 4371 Query 32036 GGCGCTAAAGGCTTTGGATCTACCGGAAATTAATT 32070 || | ||| ||||| || || ||||| ||||| Sbjct 4372 GGTTCAGGAGGTTTTGGTTCCACTGGAAA-TAATT 4405 >seq1670 Length=315515 Score = 98.7 bits (108), Expect = 8e-16 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || |||||||||||||||||||| || || | Sbjct 210673 AAAATCTT---ACCAAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGA 210729 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 210730 TGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 210789 Query 5041 TTAAATCAAC 5050 ||||||||| Sbjct 210790 ATAAATCAAC 210799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426751877433599