Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq18172 311 6e-80
seq15026 187 2e-42
seq293 138 8e-28
>seq18172
Length=33122
Score = 311 bits (344), Expect = 6e-80
Identities = 481/688 (70%), Gaps = 5/688 (1%)
Strand=Plus/Minus
Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163
|||| || || || || || | || |||||| | |||||||| || | ||||| |||||
Sbjct 27480 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGT 27421
Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223
| | ||| || ||||||| ||||| ||||| || || || | || | ||| ||| |
Sbjct 27420 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCGCGTGGTGTGTG 27361
Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283
| |||||||| | || | ||||||||||||| | ||||| || | || |||||||
Sbjct 27360 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGYTGAAGGGCACACYCAGGCCCATGT 27306
Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343
| || ||||||||||| ||||| || || ||||| || | ||||| ||||| || |
Sbjct 27305 CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAA 27246
Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403
|||||||||||| || || |||||||| | ||||| || ||||| || |||| ||
Sbjct 27245 GGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTCGGATTCCAAGCACACAGGA 27186
Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463
|||| | ||||| || |||||| | |||| ||| | |||||||| ||||| |
Sbjct 27185 TGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTA 27126
Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523
| || | || || ||| ||| || |||| || | || ||||||||||| |
Sbjct 27125 CTCCTTGATCTGAATAATCTGAATGCATATCTTTGTATTCGGTCCCAAAATGCCTCCACT 27066
Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 27583
| || || || || || || | || || ||| | ||| ||| ||| ||||||
Sbjct 27065 GAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCA 27006
Query 27584 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 27643
| ||||||| ||| || ||||| |||||||| || || ||||| || ||||| || |
Sbjct 27005 AGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 26946
Query 27644 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 27703
||||||||| || ||| |||||||||| ||||||| || |||| || || || |
Sbjct 26945 CGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACAC 26886
Query 27704 TCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACA 27763
||||| || || || ||||| | | | |||| ||| | ||||| || ||||
Sbjct 26885 ATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACA 26826
Query 27764 CGGACAAGACTCCCGTGCCCGTCCTGTC 27791
| |||| | || |||||||| | |||
Sbjct 26825 CCGACAGGGTGCCGGTGCCCGTGCGGTC 26798
>seq15026
Length=49095
Score = 187 bits (206), Expect = 2e-42
Identities = 376/552 (68%), Gaps = 12/552 (2%)
Strand=Plus/Plus
Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189
||||| | |||||| | || | |||||||||||| | ||| || ||||||| |||||
Sbjct 46639 AGCTGCATTTTCAGCAGCTCAATGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 46698
Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249
||| | || || || | || || |||| ||| || |||||||| ||||| || | |||
Sbjct 46699 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAG 46758
Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309
||||||| ||| |||| || || || ||| |||| || ||||||||||| ||||| ||
Sbjct 46759 CTGGCGACGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACCTCTGGTACAGCTG-CAG 46817
Query 27310 GAGAGCTC-TCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAG------ 27362
|| ||||| | || | ||||| || || || | ||| |||||| | || ||
Sbjct 46818 GACAGCTCATGGTTCAC-CACGTAGAAGTGGCAAAAGGCATGGCACAGGGGCAGGGTGGC 46876
Query 27363 -AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTG 27421
| ||||| | ||||| | ||||| || || | ||||| | |||||||| |
Sbjct 46877 AGGGTATGAGAGGAAGATCTTT-TGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAG 46935
Query 27422 GGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA-G 27480
||||| | |||| ||| | | |||||||| || || || || | || ||
Sbjct 46936 GGTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTACTCCTTGACGTGAATACA 46995
Query 27481 TCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGT 27540
| || || || |||| || || | ||| ||||||| || || | || || ||
Sbjct 46996 TTTAAATCCACATCTTTGTATTCAGCCACCAAAGGCCTCCACTGAAAGCTATAAACTGGG 47055
Query 27541 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 27600
|| | || || ||||| ||| || || ||||||| ||||||| ||| |||
Sbjct 47056 CCTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCCG 47115
Query 27601 TTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 27660
| ||| |||||||| || || ||||| || ||||| || | |||||||| || ||
Sbjct 47116 TGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGAGCCCTTG 47175
Query 27661 ACGAACCACAGC 27672
| |||||||||
Sbjct 47176 ATCAACCACAGC 47187
>seq293
Length=643942
Score = 138 bits (152), Expect = 8e-28
Identities = 129/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||
Sbjct 264058 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 263999
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || |||||||| || ||||||||||| ||||| || || ||||| || |
Sbjct 263998 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 263939
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
| ||| ||||| || | |||||||||||| || || ||||||||
Sbjct 263938 ATGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAG 263895
Score = 87.8 bits (96), Expect = 1e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||| || |||| || || || ||||||||||| || || || || || || || | ||
Sbjct 260792 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 260733
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
|| ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| ||
Sbjct 260732 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 260673
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
|||||| || || ||||| || ||||| || | ||||||||| ||
Sbjct 260672 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 260625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369249593783093
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |