Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq25410 111 2e-19
seq1670 111 2e-19
seq549 93.3 4e-14
seq36034 89.7 5e-13
seq5598 84.2 2e-11
seq384 84.2 2e-11
>seq25410
Length=10104
Score = 111 bits (122), Expect = 2e-19
Identities = 201/294 (68%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858
|||||||||||||||||| || ||||| || ||||| || || ||||| ||||| ||
Sbjct 10100 ACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGC 10041
Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918
||| | | ||||| || | ||| | | | || |||| || || || |||||
Sbjct 10040 TTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATC 9981
Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTT 23978
||| || ||||||||||| ||||||| || |||| ||| || |||| |
Sbjct 9980 ACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGC 9921
Query 23979 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAA 24038
|| ||| | | ||| || || || | || || || ||| |||||||||| |||
Sbjct 9920 TTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTC 9861
Query 24039 GGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092
|| ||||||||| |||||||||||| | || || ||||| || || ||
Sbjct 9860 AGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807
>seq1670
Length=315515
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590
||||||| || || || | |||||| ||||| || | ||| ||||| | ||||| ||| |
Sbjct 206374 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 206433
Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650
| | ||| ||||| |||||||| ||||| || |||||||| || || ||||| |||||||
Sbjct 206434 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 206493
Query 23651 CCAC 23654
||||
Sbjct 206494 CCAC 206497
>seq549
Length=511996
Score = 93.3 bits (102), Expect = 4e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592
|| || || ||||| | |||||| |||||||| | || ||||| | |||||||||||
Sbjct 260457 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 260516
Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652
| ||| ||||| | ||||| || || |||||||| || || || || || ||||||||
Sbjct 260517 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 260576
Query 23653 ACAAGACGT 23661
|| | ||||
Sbjct 260577 ACGACACGT 260585
>seq36034
Length=1448
Score = 89.7 bits (98), Expect = 5e-13
Identities = 169/248 (68%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568
|| ||||| ||||| |||| || || || || ||||| | |||||| |||||||| |
Sbjct 259 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 200
Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628
| ||||| | ||||||||||| | ||| ||||| | ||||| || || ||||||
Sbjct 199 CTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG--- 143
Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688
|| || || || || ||||||| | | |||| ||| | || || | | ||
Sbjct 142 ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTGTCCCCG 83
Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748
||||| | ||||| | |||| |||||||| ||||| ||||| || ||
Sbjct 82 ATCCAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTG 23
Query 23749 AAGAGAAA 23756
||||||||
Sbjct 22 AAGAGAAA 15
>seq5598
Length=148528
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464
|||| ||| |||||| | ||||||||||||||||| |||||| ||||||||||||| |
Sbjct 74655 CTCCTGGGCTCAAGCAGTCCTCCTGCCTCAGCCTCCCGAGTAGGTGGGATTACAGGCTCA 74714
Query 8465 AGCCACCACGCCAAGC 8480
|||||||| || |||
Sbjct 74715 GGCCACCACACCCAGC 74730
>seq384
Length=584784
Score = 84.2 bits (92), Expect = 2e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464
|||| ||| |||||| || ||||||||||||||||| |||||||||||| |||||||
Sbjct 241488 CTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCG 241547
Query 8465 AGCCACCACGCCAAGCTAATT 8485
|||||| |||| |||| ||
Sbjct 241548 CGCCACCGCGCCCGGCTACTT 241568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521115116524200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |