Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10582 125 5e-24 seq561 123 2e-23 seq18093 118 8e-22 seq17051 114 9e-21 seq2543 113 3e-20 seq393 113 3e-20 seq3456 111 1e-19 seq3119 100 2e-16 seq1039 98.7 7e-16 seq3805 91.5 1e-13 seq1608 89.7 4e-13 >seq10582 Length=81843 Score = 125 bits (138), Expect = 5e-24 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GT-TGG 44176 ||||||||||| || ||||||||| ||||||||| |||||||| || | | || || Sbjct 38525 AGTCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 38584 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 | | || ||||| ||||| || |||||||||| | ||||| || | ||| | ||| Sbjct 38585 C---CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 38641 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 ||||| ||| | ||| ||| | || |||| || || | || ||| ||||| | Sbjct 38642 TCCTTGTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGA 38701 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||||| |||||||||||||| || ||||| Sbjct 38702 GTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 38742 >seq561 Length=508305 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | || Sbjct 125887 AGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 125828 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | ||||| || | ||| | |||||| Sbjct 125827 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 125768 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| || ||| || ||| ||||| | || Sbjct 125767 TTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACCTCGAGAGTG 125708 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || |||||||||||||| || ||||| Sbjct 125707 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 125670 >seq18093 Length=33488 Score = 118 bits (130), Expect = 8e-22 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-- 44168 || |||||||| | | |||||||| || || ||| || |||||||||||||| | Sbjct 2800 CCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 2859 Query 44169 CGAGT-TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 |||| |||| | || |||||||| || || |||||||| | | |||||| || | Sbjct 2860 AGAGTGTGGC---CATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 2916 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| ||||| |||| | |||| | |||||||| || || Sbjct 2917 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTC 2975 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || | ||||||||||||||| ||||| Sbjct 2976 CACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 3026 >seq17051 Length=38469 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | || Sbjct 11464 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 11405 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | ||| | || ||| | |||||| Sbjct 11404 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCCTTCC 11345 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || | || || || | || ||| ||||| | || Sbjct 11344 TTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAGAGTG 11285 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||||||||| || ||||| Sbjct 11284 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 11247 >seq2543 Length=251032 Score = 113 bits (124), Expect = 3e-20 Identities = 152/208 (73%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || ||| || |||||||||||||| | | || |||| ||| Sbjct 121601 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCC 121660 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || |||||||| | | |||||| || | || | |||||||| ||| Sbjct 121661 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTC-GGGGGGATGCCTTCCTTATCCTGG 121719 Query 44249 ATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | ||| | |||||||| || |||||||||| ||| || ||||| Sbjct 121720 ATCTTGGCCTTC-ACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTT 121778 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGC 44335 ||||| ||||||||| ||||||| ||| Sbjct 121779 GCCCGTCAGGGTCTTCCCGAAGATCTGC 121806 >seq393 Length=578971 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || || || || |||||||||||||| | Sbjct 168881 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAGAA 168940 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || |||||||| || || |||||||| | | |||||| || | || Sbjct 168941 AGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 169000 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||||| | | |||||||| || |||||| Sbjct 169001 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 169060 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||| ||||| ||||| Sbjct 169061 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 169107 >seq3456 Length=207676 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || || | | || ||||||| |||||| | Sbjct 50546 CCACCCCTCAGACGGAGGACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATCAGAA 50605 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || |||||||| || || |||||||| | | |||||| | | || Sbjct 50606 AGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGGGGGG 50665 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| ||||| |||| | |||||||| ||| ||||| Sbjct 50666 ATGCCTTCCTTATCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCACTGGACTCCAC 50724 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 50725 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 50772 >seq3119 Length=221544 Score = 100 bits (110), Expect = 2e-16 Identities = 154/213 (72%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGT-TGGCGCTCGTCG 44185 ||| |||| || || ||| || |||||||||| ||| | |||| |||| | || Sbjct 196882 ACCTGGTGCAGGGTCGACTCTTTCTGGATGTTGTGATCAGAAAGAGTGTGGC---CATCT 196826 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 ||||| ||||| || |||||||| | | |||||| || | ||| | |||||||| ||| Sbjct 196825 TCCAGATGCTTGCCTGCAAAGATGAGCCTCTGCTGTTCGGGAGG-ATGCCTTCCTTATCC 196767 Query 44246 GTTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||||| ||||| ||| |||| || || ||||||| || || || Sbjct 196766 TGGATCTTGGCCTTCACA-TTCCTGATGATGTCACTGGGCTCTACCTCCAGGGTGATGGT 196708 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | || | ||||||||||||||||||||| Sbjct 196707 CTTGCTGGTCAAGGTCTTCACGAAGATTTGCAT 196675 >seq1039 Length=395486 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| | | ||||||||| | |||||| || | | || Sbjct 352048 AGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGT 351989 Query 44180 TCGTCGTCCAGCT-GCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | || ||||| | |||| || |||||||||| | ||||| || | ||| | |||| Sbjct 351988 CCATCTTCCAGTTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTT 351929 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| ||| ||||| ||| | || |||| | || | || ||| |||| | || Sbjct 351928 CTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTTAAGAGT 351869 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||||||||| || ||||| Sbjct 351868 GATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 351830 >seq3805 Length=195799 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/228 (69%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||||||| | | |||||||| || || ||| || |||||||||||||| | Sbjct 71019 CCGCCTCTCAGACAGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 70960 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || |||| ||| || || ||||||| | | |||||| || | || Sbjct 70959 AGAGTGCAGCCATCTTCCATCTGTTTGCCTGCAAAGAGGAGCCTCTGCTGGTCAGGGGGG 70900 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | ||||| || ||| ||||| ||||| || || |||||| || |||||| Sbjct 70899 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTC----GGTGTCACTGGGTTCCAC 70844 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| | || |||||||||| |||||| ||||| Sbjct 70843 CTCCGGGGTGATGGTCTTGCAGGTCAGGGTCTTCATGAAGATCTGCAT 70796 >seq1608 Length=321383 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/218 (69%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| || ||||||||| |||| | || | | || Sbjct 105361 AGTCTCAACACAAGATGAAGACTGGACTCCTTTTGAGTGTTTTGGTCAGACAAAGTACGT 105420 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | ||||| || | ||| | |||||| Sbjct 105421 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 105480 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| | ||| | || || | || || | || ||| ||||| | || Sbjct 105481 TTATCC-------TGGCCTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGTG 105533 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||||||||| || ||||| Sbjct 105534 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 105571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359739428530251