Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq10582 125 5e-24
seq561 123 2e-23
seq18093 118 8e-22
seq17051 114 9e-21
seq2543 113 3e-20
seq393 113 3e-20
seq3456 111 1e-19
seq3119 100 2e-16
seq1039 98.7 7e-16
seq3805 91.5 1e-13
seq1608 89.7 4e-13
>seq10582
Length=81843
Score = 125 bits (138), Expect = 5e-24
Identities = 162/221 (73%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GT-TGG 44176
||||||||||| || ||||||||| ||||||||| |||||||| || | | || ||
Sbjct 38525 AGTCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 38584
Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236
| | || ||||| ||||| || |||||||||| | ||||| || | ||| | |||
Sbjct 38585 C---CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 38641
Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296
||||| ||| | ||| ||| | || |||| || || | || ||| ||||| |
Sbjct 38642 TCCTTGTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGA 38701
Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| ||||| |||||||||||||| || |||||
Sbjct 38702 GTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 38742
>seq561
Length=508305
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| ||| ||||||||| |||||||| || | | ||
Sbjct 125887 AGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 125828
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || |||||||||| | ||||| || | ||| | ||||||
Sbjct 125827 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 125768
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || |||| || ||| || ||| ||||| | ||
Sbjct 125767 TTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACCTCGAGAGTG 125708
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| || || |||||||||||||| || |||||
Sbjct 125707 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 125670
>seq18093
Length=33488
Score = 118 bits (130), Expect = 8e-22
Identities = 168/231 (73%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-- 44168
|| |||||||| | | |||||||| || || ||| || |||||||||||||| |
Sbjct 2800 CCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 2859
Query 44169 CGAGT-TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
|||| |||| | || |||||||| || || |||||||| | | |||||| || |
Sbjct 2860 AGAGTGTGGC---CATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 2916
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286
|| | ||||| || ||| ||||| |||| | |||| | |||||||| || ||
Sbjct 2917 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTC 2975
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||| || || ||||| || || | ||||||||||||||| |||||
Sbjct 2976 CACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 3026
>seq17051
Length=38469
Score = 114 bits (126), Expect = 9e-21
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| ||| ||||||||| |||||||| || | | ||
Sbjct 11464 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 11405
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || |||||||||| | ||| | || ||| | ||||||
Sbjct 11404 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCCTTCC 11345
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || | || || || | || ||| ||||| | ||
Sbjct 11344 TTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAGAGTG 11285
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| |||||||||||||| || |||||
Sbjct 11284 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 11247
>seq2543
Length=251032
Score = 113 bits (124), Expect = 3e-20
Identities = 152/208 (73%), Gaps = 3/208 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || || ||| || |||||||||||||| | | || |||| |||
Sbjct 121601 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCC 121660
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
||||| || || |||||||| | | |||||| || | || | |||||||| |||
Sbjct 121661 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTC-GGGGGGATGCCTTCCTTATCCTGG 121719
Query 44249 ATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| |||| | ||| | |||||||| || |||||||||| ||| || |||||
Sbjct 121720 ATCTTGGCCTTC-ACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTT 121778
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGC 44335
||||| ||||||||| ||||||| |||
Sbjct 121779 GCCCGTCAGGGTCTTCCCGAAGATCTGC 121806
>seq393
Length=578971
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || ||||| | | |||||||| || || || || |||||||||||||| |
Sbjct 168881 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAGAA 168940
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| | || |||||||| || || |||||||| | | |||||| || | ||
Sbjct 168941 AGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 169000
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290
| |||||||| ||| ||||| ||||| | | |||||||| || ||||||
Sbjct 169001 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 169060
Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || || ||||| || || ||||||||||| ||||| |||||
Sbjct 169061 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 169107
>seq3456
Length=207676
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || ||||| | | |||||||| || || | | || ||||||| |||||| |
Sbjct 50546 CCACCCCTCAGACGGAGGACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATCAGAA 50605
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| || | || |||||||| || || |||||||| | | |||||| | | ||
Sbjct 50606 AGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGGGGGG 50665
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289
| |||||||| ||| ||||| ||||| |||| | |||||||| ||| |||||
Sbjct 50666 ATGCCTTCCTTATCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCACTGGACTCCAC 50724
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || ||||| || || ||||||||||||||||| |||||
Sbjct 50725 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 50772
>seq3119
Length=221544
Score = 100 bits (110), Expect = 2e-16
Identities = 154/213 (72%), Gaps = 9/213 (4%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGT-TGGCGCTCGTCG 44185
||| |||| || || ||| || |||||||||| ||| | |||| |||| | ||
Sbjct 196882 ACCTGGTGCAGGGTCGACTCTTTCTGGATGTTGTGATCAGAAAGAGTGTGGC---CATCT 196826
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
||||| ||||| || |||||||| | | |||||| || | ||| | |||||||| |||
Sbjct 196825 TCCAGATGCTTGCCTGCAAAGATGAGCCTCTGCTGTTCGGGAGG-ATGCCTTCCTTATCC 196767
Query 44246 GTTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
||||| ||||| ||||| ||| |||| || || ||||||| || || ||
Sbjct 196766 TGGATCTTGGCCTTCACA-TTCCTGATGATGTCACTGGGCTCTACCTCCAGGGTGATGGT 196708
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| | || | |||||||||||||||||||||
Sbjct 196707 CTTGCTGGTCAAGGTCTTCACGAAGATTTGCAT 196675
>seq1039
Length=395486
Score = 98.7 bits (108), Expect = 7e-16
Identities = 154/219 (70%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| | | ||||||||| | |||||| || | | ||
Sbjct 352048 AGTCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGT 351989
Query 44180 TCGTCGTCCAGCT-GCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238
| || ||||| | |||| || |||||||||| | ||||| || | ||| | ||||
Sbjct 351988 CCATCTTCCAGTTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTT 351929
Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298
||| ||| ||||| ||| | || |||| | || | || ||| |||| | ||
Sbjct 351928 CTTGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTTAAGAGT 351869
Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| |||||||||||||| || |||||
Sbjct 351868 GATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 351830
>seq3805
Length=195799
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/228 (69%), Gaps = 5/228 (2%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| |||||||| | | |||||||| || || ||| || |||||||||||||| |
Sbjct 71019 CCGCCTCTCAGACAGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 70960
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| || | || |||| ||| || || ||||||| | | |||||| || | ||
Sbjct 70959 AGAGTGCAGCCATCTTCCATCTGTTTGCCTGCAAAGAGGAGCCTCTGCTGGTCAGGGGGG 70900
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCAC 44289
| ||||| || ||| ||||| ||||| || || |||||| || ||||||
Sbjct 70899 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTC----GGTGTCACTGGGTTCCAC 70844
Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || || ||||| | || |||||||||| |||||| |||||
Sbjct 70843 CTCCGGGGTGATGGTCTTGCAGGTCAGGGTCTTCATGAAGATCTGCAT 70796
>seq1608
Length=321383
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/218 (69%), Gaps = 7/218 (3%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| || ||||||||| |||| | || | | ||
Sbjct 105361 AGTCTCAACACAAGATGAAGACTGGACTCCTTTTGAGTGTTTTGGTCAGACAAAGTACGT 105420
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || |||||||||| | ||||| || | ||| | ||||||
Sbjct 105421 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 105480
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| | ||| | || || | || || | || ||| ||||| | ||
Sbjct 105481 TTATCC-------TGGCCTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGTG 105533
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| |||||||||||||| || |||||
Sbjct 105534 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 105571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359739428530251
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |