Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq7377 170 3e-37
>seq7377
Length=118119
Score = 170 bits (188), Expect = 3e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
||||||||||| ||||| || |||||||||||| || ||||| || ||||| |||||
Sbjct 31714 GTCTGGAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 31773
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||| ||||||| ||||| || |||||||||||||| || ||||| || || |||||
Sbjct 31774 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 31833
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
| || || || ||||| | |||| || ||| || || | || || |||||||| |
Sbjct 31834 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 31893
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
||||| |||||||| | ||| |||||||| || || |||| ||||
Sbjct 31894 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 31942
Score = 147 bits (162), Expect = 3e-30
Identities = 215/304 (71%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| | || || ||||| || || ||||| || |||| ||||||||||| |
Sbjct 30034 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 30093
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | ||||||| || || || ||||| || || ||||| ||||||||||||
Sbjct 30094 AGGCAGTGGTGACGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 30153
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
| || || || || || |||| || ||||| | |||||| || ||||| | || |
Sbjct 30154 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCCCCAACTTCTA 30213
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
||| |||| || |||||||||| || || |||||||| |||| | | | ||||
Sbjct 30214 CCATGGTCTCCCCAAAGATGGCGTCCGGTCGAGGCTTTTCTACCAGAAGAGCAGGATACA 30273
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
||||||| || || | ||| || || || || | || ||||| || ||||| ||||
Sbjct 30274 GCTCCACGGCATCAATGTCACCATAGAGCGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 30333
Query 8583 CTGT 8586
||||
Sbjct 30334 CTGT 30337
Score = 107 bits (118), Expect = 3e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| | | |||| | ||||| || || |||||| ||| ||| | ||
Sbjct 32762 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 32821
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 32822 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 32881
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
|| |||| | || | ||||| |||||||||||| | | | ||| || ||||
Sbjct 32882 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 32941
Query 9829 TGTTTTACCTGGTGAACGAGAA 9850
| | | |||| || |||||
Sbjct 32942 TTTCCTCCCTGAAAAATGAGAA 32963
Score = 89.7 bits (98), Expect = 7e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | || ||||| || || | ||| || ||||| |||| || | |
Sbjct 33370 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 33429
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|||||||| || || || || |||||||||||| || |||||| | | || || |
Sbjct 33430 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGCACATTATAAGTT 33489
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| ||||| ||||||| || ||||| ||||
Sbjct 33490 GGCGGGCTCTCAATCAGATGTGATCTCGCTGA 33521
Score = 86.0 bits (94), Expect = 9e-12
Identities = 179/264 (68%), Gaps = 2/264 (1%)
Strand=Plus/Plus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
|| || ||||| || ||||| | ||||| ||||| || | ||| || | |||||| |
Sbjct 31147 CTCACCCGGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGAGGCCGTGTTCC 31206
Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063
| || | ||| ||||| |||| || | |||| || | | |||||||| |
Sbjct 31207 AGTAGGAGGGAGTTGTTATAGATAAATTGCTGATAGTTGTAGTGTTGGCCATCAATCTGA 31266
Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123
|| | || |||| || | ||||||||| || | |||||||||| | | |||||
Sbjct 31267 AAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGG 31326
Query 9124 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182
|||||||||||||| | | ||| ||||| || || | |||| ||| | || ||
Sbjct 31327 TTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGTG 31385
Query 9183 GTAGCCGCTGAGCTGCTGAACGTA 9206
||||| || || ||||| || ||
Sbjct 31386 ATAGCCACTCAGGTGCTGTACATA 31409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716364206205120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |