Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq7377 170 3e-37 >seq7377 Length=118119 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||||||||| ||||| || |||||||||||| || ||||| || ||||| ||||| Sbjct 31714 GTCTGGAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 31773 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| ||||| || |||||||||||||| || ||||| || || ||||| Sbjct 31774 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 31833 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| || ||| || || | || || |||||||| | Sbjct 31834 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 31893 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || |||| |||| Sbjct 31894 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 31942 Score = 147 bits (162), Expect = 3e-30 Identities = 215/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| || || ||||| || |||| ||||||||||| | Sbjct 30034 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 30093 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | ||||||| || || || ||||| || || ||||| |||||||||||| Sbjct 30094 AGGCAGTGGTGACGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 30153 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || || || || |||| || ||||| | |||||| || ||||| | || | Sbjct 30154 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCCCCAACTTCTA 30213 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||||| || || |||||||| |||| | | | |||| Sbjct 30214 CCATGGTCTCCCCAAAGATGGCGTCCGGTCGAGGCTTTTCTACCAGAAGAGCAGGATACA 30273 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 ||||||| || || | ||| || || || || | || ||||| || ||||| |||| Sbjct 30274 GCTCCACGGCATCAATGTCACCATAGAGCGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 30333 Query 8583 CTGT 8586 |||| Sbjct 30334 CTGT 30337 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 32762 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 32821 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 32822 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 32881 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | ||||| |||||||||||| | | | ||| || |||| Sbjct 32882 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 32941 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | | |||| || ||||| Sbjct 32942 TTTCCTCCCTGAAAAATGAGAA 32963 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 33370 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 33429 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||| || || || || |||||||||||| || |||||| | | || || | Sbjct 33430 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGCACATTATAAGTT 33489 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||| ||||||| || ||||| |||| Sbjct 33490 GGCGGGCTCTCAATCAGATGTGATCTCGCTGA 33521 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 || || ||||| || ||||| | ||||| ||||| || | ||| || | |||||| | Sbjct 31147 CTCACCCGGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGAGGCCGTGTTCC 31206 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063 | || | ||| ||||| |||| || | |||| || | | |||||||| | Sbjct 31207 AGTAGGAGGGAGTTGTTATAGATAAATTGCTGATAGTTGTAGTGTTGGCCATCAATCTGA 31266 Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123 || | || |||| || | ||||||||| || | |||||||||| | | ||||| Sbjct 31267 AAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGG 31326 Query 9124 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182 |||||||||||||| | | ||| ||||| || || | |||| ||| | || || Sbjct 31327 TTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGTG 31385 Query 9183 GTAGCCGCTGAGCTGCTGAACGTA 9206 ||||| || || ||||| || || Sbjct 31386 ATAGCCACTCAGGTGCTGTACATA 31409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716364206205120