Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18093 159 8e-34 seq561 158 3e-33 seq3456 156 1e-32 seq17051 154 4e-32 seq393 154 4e-32 seq10582 149 2e-30 seq1039 129 1e-24 seq1608 120 7e-22 seq6983 113 1e-19 seq3799 111 4e-19 seq25264 100 7e-16 >seq18093 Length=33488 Score = 159 bits (176), Expect = 8e-34 Identities = 170/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || | || || || || |||||||| |||| Sbjct 3034 AGGTCAAAATGC---AGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGG 2978 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| |||||||| || Sbjct 2977 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCAT 2920 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || |||||||| |||||||| ||||| Sbjct 2919 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCACACTCT 2860 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 2859 TTCTGATTACAACATCCAGAAAGAGTCTACCCTGCACCTGGT 2818 >seq561 Length=508305 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||| || || ||||| |||||||| ||| || || Sbjct 125673 CAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTGCGAT 125732 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| |||||||| |||||||| ||||| ||||||||| Sbjct 125733 ACAATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAA 125792 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 125793 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 125852 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || || |||||||| |||||||| Sbjct 125853 CAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACT 125887 >seq3456 Length=207676 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||| |||||||| | ||| Sbjct 50769 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCCAGTGAC 50710 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| ||||| || ||||| ||||| || | |||||| Sbjct 50709 ACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGTCCAGCAG 50650 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | |||||||| || || |||||||| |||||||| | |||||| | ||||| || || Sbjct 50649 AGGCTTATCTTTGCAGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACGACATC 50590 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||| ||||||||||| || || Sbjct 50589 CAGAAAGGGTCAACACTGCACCTGGT 50564 >seq17051 Length=38469 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| |||||||| ||| ||| || Sbjct 11250 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 11309 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| |||||||| |||||||| |||| |||| |||| Sbjct 11310 ACAATGGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGACCGGCAA 11369 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 11370 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 11429 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 11430 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 11464 >seq393 Length=578971 Score = 154 bits (170), Expect = 4e-32 Identities = 169/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || || ||||| || || || || || || |||||||| |||| Sbjct 169115 AGGTCAAAATGC---AGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 169059 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| ||||| || ||||| || Sbjct 169058 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 169001 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || |||||||| |||||||| | ||||| Sbjct 169000 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCT 168941 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 168940 TTCTGATTACAACATCCAGAAAGATTCGACCCTGCACCTGGT 168899 >seq10582 Length=81843 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| |||||||| ||| ||| || Sbjct 38739 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 38680 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||| | |||||||| |||||||| ||||| ||||||||| Sbjct 38679 ACAATAGAAAACGTAAAGGCCAAGGTCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAA 38620 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| ||| | | || || ||| | Sbjct 38619 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAACATT 38560 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || || |||||||| |||||||| Sbjct 38559 CAAAAGGAGTTCACGCTTCATCTTGTGTTGAGACT 38525 >seq1039 Length=395486 Score = 129 bits (142), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| || |||| ||| ||| || Sbjct 351833 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTAAGGTCGAACCCTCGGAT 351892 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || ||||| |||||||| ||||||| ||||| ||||||||| Sbjct 351893 GCAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGAAAGGAATTCCTCCTGACCAGCAA 351952 Query 178044 CGACTTATCTTCGCCGGAAAAC-AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 |||| ||||| || || || | | || ||||||||| | | | | | || || ||||| Sbjct 351953 AGACTGATCTTTGCAGGCAAGCAAACTGGAAGATGGACGTATTTTGTCTGACTACAACGT 352012 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || | || |||||||| |||||||| Sbjct 352013 TCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACT 352048 >seq1608 Length=321383 Score = 120 bits (132), Expect = 7e-22 Identities = 156/215 (73%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| |||||||| ||| ||| || Sbjct 105568 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 105509 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || |||| ||||| || |||||||| ||||| ||||||||| Sbjct 105508 ACAACAGAAAATGT------AAAG-GCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 105456 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || | ||| Sbjct 105455 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACCAAAACACT 105396 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || | || |||||||| |||||||| Sbjct 105395 CAAAAGGAGTCCAGTCTTCATCTTGTGTTGAGACT 105361 >seq6983 Length=123737 Score = 113 bits (124), Expect = 1e-19 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| |||| || || ||||| || || ||||| ||| |||| ||| ||||| Sbjct 100792 CAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTCAAGGTTGAACCTTCAGAT 100733 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| ||||||||||||||||| |||||||| Sbjct 100732 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCTAACCAGCAA 100673 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 |||| ||||| || || || || || || ||||| Sbjct 100672 AGACTGATCTTTGCTGGCAAGCAACTGGAGGATGG 100638 >seq3799 Length=195891 Score = 111 bits (122), Expect = 4e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||| | || |||||| |||| |||||||| ||||| || || ||| Sbjct 103557 GACACCATCGAGAACATGAAGGCCAAGATTGAGGATAAAGAAGGCATCCCCCCTGATCAG 103616 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || |||||||| ||||| || | |||||| | ||||| | | Sbjct 103617 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCGCACTCTTTCTGATTACAGC 103676 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 103677 ATCCAGAAAGAGTCGACCCTGCACCTGGT 103705 >seq25264 Length=10399 Score = 100 bits (110), Expect = 7e-16 Identities = 120/162 (74%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||| || || ||||| ||| |||| || || || Sbjct 6878 CAGATTTTCGTGAAGACCCTGACAGG-AAGACCATCACTCTCAAGGTTGAGCCCTTGGAT 6820 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| |||||||| |||||||| | || ||||||||| Sbjct 6819 ACAACAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGCAA 6760 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 |||| ||||| || || || || || ||||||||| | ||| Sbjct 6759 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACT 6718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202848969228382