Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq18093 159 8e-34
seq561 158 3e-33
seq3456 156 1e-32
seq17051 154 4e-32
seq393 154 4e-32
seq10582 149 2e-30
seq1039 129 1e-24
seq1608 120 7e-22
seq6983 113 1e-19
seq3799 111 4e-19
seq25264 100 7e-16
>seq18093
Length=33488
Score = 159 bits (176), Expect = 8e-34
Identities = 170/222 (77%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| | || |||||||| || | || || || || |||||||| ||||
Sbjct 3034 AGGTCAAAATGC---AGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGG 2978
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || ||| |||||||||||||||| || ||||| ||||| |||||||| ||
Sbjct 2977 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCAT 2920
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
||| || |||||||| | || ||||| || || |||||||| |||||||| |||||
Sbjct 2919 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCACACTCT 2860
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| | ||||| ||| |||| ||||| || || ||||| || ||
Sbjct 2859 TTCTGATTACAACATCCAGAAAGAGTCTACCCTGCACCTGGT 2818
>seq561
Length=508305
Score = 158 bits (174), Expect = 3e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || ||||| || || ||||| |||||||| ||| || ||
Sbjct 125673 CAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTGCGAT 125732
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||||| |||||||| |||||||| ||||| |||||||||
Sbjct 125733 ACAATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAA 125792
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || ||||||||| | ||| | | || || ||| |
Sbjct 125793 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 125852
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || | || || |||||||| ||||||||
Sbjct 125853 CAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACT 125887
>seq3456
Length=207676
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || || |||||||| |||||||| | |||
Sbjct 50769 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGTCCAGTGAC 50710
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| || ||||| ||||| || ||||| ||||| || | ||||||
Sbjct 50709 ACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGTCCAGCAG 50650
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| |||||||| || || |||||||| |||||||| | |||||| | ||||| || ||
Sbjct 50649 AGGCTTATCTTTGCAGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACGACATC 50590
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| |||| ||||||||||| || ||
Sbjct 50589 CAGAAAGGGTCAACACTGCACCTGGT 50564
>seq17051
Length=38469
Score = 154 bits (170), Expect = 4e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || ||||| |||||||| ||| ||| ||
Sbjct 11250 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 11309
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||||| |||||||| |||||||| |||| |||| ||||
Sbjct 11310 ACAATGGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGACCGGCAA 11369
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || ||||||||| | ||| | | || || ||| |
Sbjct 11370 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 11429
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || |||||||| ||||||||
Sbjct 11430 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 11464
>seq393
Length=578971
Score = 154 bits (170), Expect = 4e-32
Identities = 169/222 (76%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| | || || ||||| || || || || || || |||||||| ||||
Sbjct 169115 AGGTCAAAATGC---AGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 169059
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || ||| ||||||||||||| || || ||||| ||||| || ||||| ||
Sbjct 169058 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 169001
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
||| || |||||||| | || ||||| || || |||||||| |||||||| | |||||
Sbjct 169000 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCT 168941
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| | ||||| ||| |||| ||||| || || ||||| || ||
Sbjct 168940 TTCTGATTACAACATCCAGAAAGATTCGACCCTGCACCTGGT 168899
>seq10582
Length=81843
Score = 149 bits (164), Expect = 2e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || ||||| |||||||| ||| ||| ||
Sbjct 38739 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 38680
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||| | |||||||| |||||||| ||||| |||||||||
Sbjct 38679 ACAATAGAAAACGTAAAGGCCAAGGTCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAA 38620
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || ||||||||| ||| | | || || ||| |
Sbjct 38619 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAACATT 38560
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || | || || |||||||| ||||||||
Sbjct 38559 CAAAAGGAGTTCACGCTTCATCTTGTGTTGAGACT 38525
>seq1039
Length=395486
Score = 129 bits (142), Expect = 1e-24
Identities = 159/216 (74%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || ||||| || |||| ||| ||| ||
Sbjct 351833 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTTAAGGTCGAACCCTCGGAT 351892
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || || || || || ||||| |||||||| ||||||| ||||| |||||||||
Sbjct 351893 GCAATAGAAAATGTAAAGGCCAAGATCCAGGACAAGAAAGGAATTCCTCCTGACCAGCAA 351952
Query 178044 CGACTTATCTTCGCCGGAAAAC-AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102
|||| ||||| || || || | | || ||||||||| | | | | | || || |||||
Sbjct 351953 AGACTGATCTTTGCAGGCAAGCAAACTGGAAGATGGACGTATTTTGTCTGACTACAACGT 352012
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || | || |||||||| ||||||||
Sbjct 352013 TCAAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACT 352048
>seq1608
Length=321383
Score = 120 bits (132), Expect = 7e-22
Identities = 156/215 (73%), Gaps = 7/215 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || ||||| |||||||| ||| ||| ||
Sbjct 105568 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 105509
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | || || || |||| ||||| || |||||||| ||||| |||||||||
Sbjct 105508 ACAACAGAAAATGT------AAAG-GCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 105456
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || ||||||||| | ||| | | || | |||
Sbjct 105455 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACCAAAACACT 105396
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || | || |||||||| ||||||||
Sbjct 105395 CAAAAGGAGTCCAGTCTTCATCTTGTGTTGAGACT 105361
>seq6983
Length=123737
Score = 113 bits (124), Expect = 1e-19
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||| |||| || || ||||| || || ||||| ||| |||| ||| |||||
Sbjct 100792 CAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTCAAGGTTGAACCTTCAGAT 100733
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 100732 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATCCCTCCTAACCAGCAA 100673
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
|||| ||||| || || || || || || |||||
Sbjct 100672 AGACTGATCTTTGCTGGCAAGCAACTGGAGGATGG 100638
>seq3799
Length=195891
Score = 111 bits (122), Expect = 4e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||||||| | || |||||| |||| |||||||| ||||| || || |||
Sbjct 103557 GACACCATCGAGAACATGAAGGCCAAGATTGAGGATAAAGAAGGCATCCCCCCTGATCAG 103616
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| | || ||||| || || |||||||| ||||| || | |||||| | ||||| | |
Sbjct 103617 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCCGCACTCTTTCTGATTACAGC 103676
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || ||||| || ||
Sbjct 103677 ATCCAGAAAGAGTCGACCCTGCACCTGGT 103705
>seq25264
Length=10399
Score = 100 bits (110), Expect = 7e-16
Identities = 120/162 (74%), Gaps = 1/162 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || ||||| || || ||||| ||| |||| || || ||
Sbjct 6878 CAGATTTTCGTGAAGACCCTGACAGG-AAGACCATCACTCTCAAGGTTGAGCCCTTGGAT 6820
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | || || || || ||||| |||||||| |||||||| | || |||||||||
Sbjct 6819 ACAACAGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGCAA 6760
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085
|||| ||||| || || || || || ||||||||| | |||
Sbjct 6759 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACT 6718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202848969228382
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |