Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq2543 107 2e-18
seq393 102 8e-17
seq18093 98.7 9e-16
seq3456 96.9 3e-15
seq561 95.1 1e-14
>seq2543
Length=251032
Score = 107 bits (118), Expect = 2e-18
Identities = 162/229 (71%), Gaps = 1/229 (0%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | |||||| | ||||| ||||| || ||| ||||| ||||| || ||
Sbjct 121579 ACAGCCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATC 121638
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| | |||| |||| || ||||| ||||| || || || || | ||| ||||| |
Sbjct 121639 AGAAATAGTGCAGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 121698
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
|||| || ||||| ||| ||| || ||||| | | ||||| || | |||
Sbjct 121699 GGGATGCCT-TCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTC 121757
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGC 41860
|||||||| ||| || || || |||||||| ||||| |||| ||||||
Sbjct 121758 CACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGC 121806
>seq393
Length=578971
Score = 102 bits (112), Expect = 8e-17
Identities = 163/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| ||||| || || ||||| ||||| || ||
Sbjct 168877 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATC 168936
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || ||||| | || || ||||| ||||| || || || || | ||| ||||| |
Sbjct 168937 AGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 168996
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||| | || ||||| ||| ||| || ||||| | | ||||| || | |||
Sbjct 168997 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTC 169056
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||||| || || || || || ||||| ||||| || || |||||||| ||
Sbjct 169057 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 169110
>seq18093
Length=33488
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| || ||
Sbjct 2796 ACAGCCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATC 2855
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || ||| | | || || ||||| ||||| || || || || | ||| ||||| |
Sbjct 2856 AGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 2915
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||| | || || || ||| ||| || ||||| | | ||||| || | |||
Sbjct 2916 GGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTC 2975
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||||| || || || || || |||| ||||| ||||| |||||||| ||
Sbjct 2976 CACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 3029
>seq3456
Length=207676
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| ||||| || | | ||||| |||| || ||
Sbjct 50542 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATC 50601
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || |||| | || || ||||| ||||| || || || || | ||| ||| | |
Sbjct 50602 AGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGG 50661
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||| | || ||||| ||| ||| || ||||| | | ||||| || |||||
Sbjct 50662 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTC 50721
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| || || || || || ||||| ||||| ||||| ||||||||
Sbjct 50722 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 50772
>seq561
Length=508305
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710
||||| ||||| || ||| |||||| |||||||| ||||| || | || || | ||
Sbjct 125881 AACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 125822
Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770
|| || |||||||| || || ||||| | || ||||| | |||| | |||||||||
Sbjct 125821 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 125762
Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829
||| || ||| | || | | || |||| | || ||||| | || || ||
Sbjct 125761 TGGATCTTGGCCTTTA-CGTTTTCTATTGTATCGCAGGGTTCGACCTCGAGAGTGATGGT 125703
Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || ||||| ||||| |||||||||||||| ||
Sbjct 125702 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461973435303600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |