Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2543 107 2e-18 seq393 102 8e-17 seq18093 98.7 9e-16 seq3456 96.9 3e-15 seq561 95.1 1e-14 >seq2543 Length=251032 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | |||||| | ||||| ||||| || ||| ||||| ||||| || || Sbjct 121579 ACAGCCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATC 121638 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || | |||| |||| || ||||| ||||| || || || || | ||| ||||| | Sbjct 121639 AGAAATAGTGCAGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 121698 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 |||| || ||||| ||| ||| || ||||| | | ||||| || | ||| Sbjct 121699 GGGATGCCT-TCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTC 121757 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGC 41860 |||||||| ||| || || || |||||||| ||||| |||| |||||| Sbjct 121758 CACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGC 121806 >seq393 Length=578971 Score = 102 bits (112), Expect = 8e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || || ||||| ||||| || || Sbjct 168877 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATC 168936 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||| ||||| || || || || | ||| ||||| | Sbjct 168937 AGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 168996 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || ||||| ||| ||| || ||||| | | ||||| || | ||| Sbjct 168997 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTC 169056 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || || ||||| ||||| || || |||||||| || Sbjct 169057 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 169110 >seq18093 Length=33488 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| || || Sbjct 2796 ACAGCCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATC 2855 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||| | | || || ||||| ||||| || || || || | ||| ||||| | Sbjct 2856 AGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 2915 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || || || ||| ||| || ||||| | | ||||| || | ||| Sbjct 2916 GGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTC 2975 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || || |||| ||||| ||||| |||||||| || Sbjct 2976 CACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 3029 >seq3456 Length=207676 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || | | ||||| |||| || || Sbjct 50542 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATC 50601 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || |||| | || || ||||| ||||| || || || || | ||| ||| | | Sbjct 50602 AGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGG 50661 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || ||||| ||| ||| || ||||| | | ||||| || ||||| Sbjct 50662 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTC 50721 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 50722 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 50772 >seq561 Length=508305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||| ||||| || ||| |||||| |||||||| ||||| || | || || | || Sbjct 125881 AACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 125822 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || || |||||||| || || ||||| | || ||||| | |||| | ||||||||| Sbjct 125821 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 125762 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| || ||| | || | | || |||| | || ||||| | || || || Sbjct 125761 TGGATCTTGGCCTTTA-CGTTTTCTATTGTATCGCAGGGTTCGACCTCGAGAGTGATGGT 125703 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| ||||| |||||||||||||| || Sbjct 125702 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461973435303600