Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq86921 129 5e-25 >seq86921 Length=222198629 Score = 129 bits (142), Expect = 5e-25 Identities = 317/473 (67%), Gaps = 7/473 (1%) Strand=Plus/Plus Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929 |||||| | || || ||||||| || | || ||||| ||||| ||| || | || Sbjct 104793084 CAAGGAGTAGACCAACTGCAAAAGGTGACTGACACAATCAAAACCAACTGTGATGACAGA 104793143 Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989 |||| || | | ||||||||||| ||| |||| ||||||| || |||| || Sbjct 104793144 AGAATCATCCTGTGTGGGTGGAATCCAAAAGATCTCCCTTTAATGG--CT-CCTCTCTGC 104793200 Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 || | | || ||||| ||| | | ||| ||||| | ||||| || | |||| ||| Sbjct 104793201 CATTCCCTTTGCCAGTTCTACCTGGAAAATGGTGAGCTGTCCTGTCAGCTGTACCGGAGC 104793260 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTAC 19109 || || || |||||||| | || || | || | | | ||||| || || |||||| Sbjct 104793261 TCAGGAGACATGGGCCTGGTTGTGCCCTCCAGTGTCACCAGCTATGCCCTGCTCACCTAC 104793320 Query 19110 ATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCA 19169 | | | || | ||||| || || || || || || ||||| |||| |||||| Sbjct 104793321 AGGATGGTACACATCACAGGCCTGAAGCCCAATGACTTCATACATACTTTGGGAGATGCA 104793380 Query 19170 CATATTTACTTGAATCATATAGATGCT-TTAAAAGTGCAGCTAGCTCGATCCCCAAAACC 19228 ||||||||| ||| |||| | || ||| | ||| ||||||| || |||| || Sbjct 104793381 CATATTTACCTGAGTCATGTTGA-GCTGCTGAAAATGCAGCTTCAGTGAGAACCAAGGCC 104793439 Query 19229 TTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA-TATAAACGACTTTAAATGGGACG 19287 ||| || ||||| | || |||| || ||| || | ||||| || | | Sbjct 104793440 TTTCCCGAAGCTTAAGGTCCTTTGAAAAGT-TGAGACAATTGATGACTTCAAGGTTAAAG 104793498 Query 19288 ATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGAAATGGCT 19340 | |||||| |||| || || ||||| |||| | ||||||||||||||||| Sbjct 104793499 ACTTTCAGATTGAGGGGTACAATCCTCACCTTACTATAAAAATGGAAATGGCT 104793551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398200945918125