Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq52188 482 2e-131 seq63847 354 6e-93 seq36986 320 1e-82 seq1 123 2e-23 seq130414 87.8 1e-12 >seq52188 Length=152998503 Score = 482 bits (534), Expect = 2e-131 Identities = 455/579 (79%), Gaps = 1/579 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||||| ||||||||||||||||||||||| | |||| Sbjct 51604349 AAAACACCTTCACATTAATTGTTCTTCTCCTATACTTCAAATTTGTACTTAATGCCTTTC 51604290 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || | || ||||||||||| ||| |||||| | ||||||||||||||| | | Sbjct 51604289 TCCTCCTGGATATCAGAAAGAACACCTGGGTATTCTGGGAGAAGTTTGTATTTCTCCAAA 51604230 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| ||||||| |||||| || ||||| ||||| ||||||| || Sbjct 51604229 TCAACTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATAATCCTTGTCACAAGTAGC 51604170 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 |||||| | ||| |||| ||||| ||||| |||||||||||||| |||| ||| Sbjct 51604169 CTAAGATGCCCTGGCCTGTTCATGGCTTCCTTATAAACAGAACTACCTCCCATTACCCAA 51604110 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||||||| | ||||| |||||||||||| || || |||||||||| |||||||| | | Sbjct 51604109 ACCATGTCCAGTTTATGTGCTAATTCTGGTTGCTCAATAAGTTTTAAGGCATCATCCAGA 51604050 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTA-GTTCCTTGCTGAGAACAAC 4313 || ||||| | |||||||| || |||||| | |||| | |||| | || ||||| | Sbjct 51604049 CTTTTAGCAAGAAAATGAGTTCCTTGTGGAGGTTCCTGGAGGTTCTCTACTAAGAACTAT 51603990 Query 4314 ATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACC 4373 |||||||||| | |||||||| | ||||||| ||||| |||||||| ||||| |||| Sbjct 51603989 ATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGAGAACCATGTCTTCCTACC 51603930 Query 4374 CATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATG 4433 ||||||||| |||||||||||| || ||| || || || || |||||||||||||||| Sbjct 51603929 CATAATCACCAAATTCTGTTTACCTTCTACTGATGAGGTTGTGGTCATTCTTTGGAAATA 51603870 Query 4434 TTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTT 4493 || || |||||| | || ||||| |||| || || | ||||| ||||||||||| Sbjct 51603869 CTTGAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTT 51603810 Query 4494 TTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || | ||||| || || |||||||| | ||||||| Sbjct 51603809 CTGGGACACAGCGACGATACAGTTTAGCGAACGAACCAT 51603771 Score = 154 bits (170), Expect = 1e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 26950 GAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATG 27009 |||||||||| || || || |||||||| |||||||| ||||||||||| |||| || | Sbjct 50206265 GAACAATGGGGGTGACACAGGTGCAGCCCACAGTCACCAGCATCTTCTCCAGCCGGAAGG 50206206 Query 27010 AATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTG 27069 | | || ||| | || | | | |||| || | ||||| || ||||| ||||| | Sbjct 50206205 AGTGGGGACAGTGCCGAGACTCCCTTCGCAGAACCAAGATCTCCTGCTGGATGGGGACGG 50206146 Query 27070 AGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTG 27129 |||||||||||| |||| | ||||| |||| ||| ||||| || ||| | | ||||| | Sbjct 50206145 AGTTCATGTGGTGGTCTTCCTTCCCTTCAGTATTGACACAGCCCCAGTGGAGGCACTTGG 50206086 Query 27130 CTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 | ||||| |||||||| || ||||| || | || ||||| || Sbjct 50206085 CCTCCCAGATCACAGAAGGGTATCTCTCAGGGTCCTCATTCCG 50206043 >seq63847 Length=148068395 Score = 354 bits (392), Expect = 6e-93 Identities = 418/560 (75%), Gaps = 8/560 (1%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||| ||||||||||||||||||||| ||| | |||||| || || |||| Sbjct 59007209 ATTAATCATTCTTTGCATATACTTCAAATTTGTACTCAATGCCTTTCTCCTCCTGGACAT 59007150 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||||||| || ||| ||| || |||||| |||||||| | |||||| ||||||| Sbjct 59007149 CAGAAAGAATACCTGGGTATACTGGGGGAAGTTTATATTTCTCCAAATCAAAGTCTGGAA 59007090 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 ||| ||||||| |||||| | ||||| ||||| |||||||| ||| |||| | || || Sbjct 59007089 AAAGTGTGTCACTTTCAAATTTCTGCATAATCCTTGTCACAAATAGTCTAAGGTGGCCTG 59007030 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | || | | ||| ||||| |||||||| ||||| | |||||| ||||||| |||| Sbjct 59007029 GTTTCTTCGTGGTTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTTCACTT 59006970 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTA-AA 4266 ||||||||||||| || || ||| |||||| |||| | | ||| || || | || Sbjct 59006969 TATTTGCTAATTCCAATTGCTCAATAACTTTTAAGGCATTGACCAGACTTTTGGCAAGAA 59006910 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTC-TGCC 4325 ||||||||| || ||| | || || || || |||||||| | |||||||| | | Sbjct 59006909 AAATGAGCTTCTTGGGGAGGTTCTTTAAGGTCTCAACTGAGAACTAAATTAATTCTTTTC 59006850 Query 4326 TTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAA 4385 ||||||||| | ||||||| ||||| |||||||| ||||| |||||||||||||||| Sbjct 59006849 CTTTAAAGGCTGATTCTTCTTGGGAATAGAGAACCATGTCTTCCTACCCATAATCACTAA 59006790 Query 4386 ATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT-GT----TTAAAA 4440 | | || ||| | || || || | || ||||||||| |||||| || || || Sbjct 59006789 AGTTTGCTTACGTTCTA-TGAGGAAGATGTGGTCATTCTTGGGAAATAGTGTACTTGAAT 59006731 Query 4441 TCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCT 4500 |||||| | || ||| | ||| | || | |||| |||||| |||| || | Sbjct 59006730 TCATTCCTGAGCGGGGGCTACAGCACGCCCCCGTTCTTGCAGATGCCCTTGTTCTGGGAC 59006671 Query 4501 ACAGCAACAATGCAGTTTAG 4520 ||||| |||||||||||||| Sbjct 59006670 ACAGCGACAATGCAGTTTAG 59006651 >seq36986 Length=206538554 Score = 320 bits (354), Expect = 1e-82 Identities = 403/550 (73%), Gaps = 5/550 (1%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| ||||| |||||| || | | ||| ||||||||||| ||| ||| |||||| Sbjct 148497318 AAAACACATTCACATTAATTGTTATCTTTATACACTTCAAATTTATACATAACACTTTTT 148497259 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || ||| ||||||||||| ||| |||||| | |||||| ||||||| | | Sbjct 148497258 TCCTCCTGGACACCAGAAAGAACACCTGGGTATTCTGGGAGAAGTTTACATTTCTCCAAA 148497199 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| || ||||||||| |||| | |||||| || |||||||| || || ||| ||| Sbjct 148497198 TCAATTTATGGAAAAAATGTGTTGCTTTCAAATTCCTGCATGATTCTTGTTACAGCTAGT 148497139 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 || ||| || ||| | |||||| ||| ||||| ||||||| ||||| | | || | Sbjct 148497138 CTAGGATGGCCTGGCTTGTTCATAGTTTCCTTATAAGCAGAACTGCCTCCCACTGTCTAA 148497079 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||| ||| || || |||| |||||||| || | || ||||||| ||||||| | | Sbjct 148497078 ACCACGTCCAC-TTCTTTGTTAATTCTGATTGCTTAATACGTTTTAAGTCATCATCCAGA 148497020 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || |||| ||||||||||| |||| | | ||||| ||||| | || ||||| | Sbjct 148497019 CTTTTGGCTAGAAAATGAGCTCCTTGTGAAGGTTCCTTGAGTTCTCTACTTAGAACTGGA 148496960 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||||||||| | |||||||| | | |||||| |||| |||| || ||||| ||||| Sbjct 148496959 TTAATTCTGTCCTTTAAAGGTCAGCTCTTCTAGGGAAGAGAGAGTCATGTCTTCCTACCC 148496900 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| |||||||||||| | | | | || || || ||| |||| |||||| Sbjct 148496899 ATAATCACAAAATTCTGTTTACC---TTCTGCTGAGGTTGTGGTCCTTCTCCGGAAATTC 148496843 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 ||||| |||||| | | | ||||| || | ||| | | ||||| ||||||| || Sbjct 148496842 TTAAATTCATTCCTGA-ACGGGGCCAGGGTAGGTTTCTGTTCTTGCCGTTGCCCATCTTC 148496784 Query 4495 TGAGCTACAG 4504 || | |||| Sbjct 148496783 TGGGACACAG 148496774 >seq1 Length=240380223 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | || ||| |||||||| ||||||| |||||||||||| Sbjct 144846489 TTATAAACAGAACTGCCTCCCACTACCCAAACCATGTCCACTTTATGTGCTAATTCTGGT 144846548 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || ||||||| ||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 144846549 TGCTCAGTAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 144846608 Query 4285 AGCTCC 4290 | ||| Sbjct 144846609 GGTTCC 144846614 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 144852704 CTTGAGGTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCCGG 144852763 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| |||||||||||| || Sbjct 144852764 AATAGAGAACCATGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 144852812 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 144836954 AAAACACCTTCACATTAATTGTTCTTCTCATATACTTCAAATTTGTACTTAATGCTTTTC 144837013 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || | || ||||||||||| ||| ||| Sbjct 144837014 TCCTCCTGGATATCAGAAAGAACACCTGGGTAT 144837046 Score = 96.9 bits (106), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 144842617 AAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAACTCCTGCAT 144842676 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 ||||| |||||||| ||| ||| | || ||| |||| ||||| || Sbjct 144842677 AATCCTTGTCACAAATAGTCTAACGTGGCCTGGCCTGTTCATGGCTTCCTT 144842727 >seq130414 Length=94101111 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| ||||| || || || | ||| |||| Sbjct 42661555 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTT 42661614 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||| | || || || | || || || || || ||||| |||||||| | Sbjct 42661615 CTTCTCTGTTGGAGAATCCTAGGCTGTCCAAGAAGTTTCGGGACCCATTGGCATCCCAGA 42661674 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCC 102195 | | ||| || | ||| || || || || |||||||| Sbjct 42661675 TTTTCACTCCCTTGGATGACAGTTCCTTAGCGTTTGTAGATCC 42661717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360072914298875