Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq14907 248 1e-60 seq130414 168 8e-37 seq152761 147 3e-30 seq86921 136 5e-27 >seq14907 Length=168638799 Score = 248 bits (274), Expect = 1e-60 Identities = 595/891 (67%), Gaps = 17/891 (2%) Strand=Plus/Plus Query 9472 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 9531 ||| | |||||| || ||||| | |||| || ||||||| | |||||| | Sbjct 15957352 CCCCCACTGTATTCCCTGGTGTTCGTGGTTGGTCTGCTGGGCAACGCGATGGTGGTGGTG 15957411 Query 9532 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 9591 || ||| || ||||| || | || | | | || ||||| || ||| | || ||||| Sbjct 15957412 ATCCTCACAAAATACAGGAGGCTCCGGATCATGACCAACATCTTCCTGCTCAATTTGGCC 15957471 Query 9592 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 9651 || ||||||||||| || || || ||| ||| || ||||| ||||| | | | || Sbjct 15957472 ATTTCTGACTTGCTCTTCCTGTTCACTCTGCTGTTCTGGATTCACTACA---GCAGGTCG 15957528 Query 9652 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 9711 | || ||| || || | | ||||||| || ||| || | | |||||| Sbjct 15957529 AACGAGTGGGTGTTCGGCCACTTCATGTGTAAGCTCCTCTCCGGGCTTTACTACATGGGC 15957588 Query 9712 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 9771 |||||||| || | || | |||||||||||| || ||||| |||| || || | ||| Sbjct 15957589 TTGTACAGCGAGATTTTCTTCATCATCCTGCTGACCATAGACCGGTACCTGGCCATCGTC 15957648 Query 9772 TATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT 9831 | || || || || || | || || || | || || | | | || Sbjct 15957649 CACGCCGTGTTCGCCCTGCGGACCCGGACCGTCACTTTCGGTATCATCATGAGCGTCCTC 15957708 Query 9832 ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGAT 9891 |||||| ||||||||| | | |||||||||||||| |||| ||| |||| || Sbjct 15957709 ACCTGGGGCCTGGCAGGGATAGCGGCCCTCCCTGAATTTGTCTTCCATCAGTCCCAAAAT 15957768 Query 9892 GACAATGGTAGGGTTCAG-TGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGA 9949 || || | || || ||| ||| || |||| || | | | | || |||| Sbjct 15957769 GATGCTGA-ACAGTACATCTGTTTGCCTCTTTATCCAG-GAGGCCAAGAGGATAACTGGA 15957826 Query 9950 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 10009 ||| ||| | | | ||| || | ||||| ||||||||||||| |||| Sbjct 15957827 AGCGTTTCCATGCTCTGAGCATGAACATCCTCAGTCTGGCCCTGCCTCTGCTCATCATGG 15957886 Query 10010 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 10069 | ||||||||| | |||||| || | |||| |||| |||||| || | ||||||| Sbjct 15957887 CCGTCTGCTACGCGGGAATTATTAGGACACTGCTGAGATGCCCCAATAAAACCAAGTACA 15957946 Query 10070 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 10129 |||||||| ||||||| |||||||||||||||| || ||| | || ||||| ||||||| Sbjct 15957947 AGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATGTTCTGGACCCCCTACA 15958006 Query 10130 ACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGA 10189 || | || ||||| || ||| | || || | | |||||| || || | ||| Sbjct 15958007 ACCTGGTCCTCCTTCTCTCTGCTTTCCAAACGA-TCTTCTT----TGAGGTCAGTTGTGA 15958061 Query 10190 GC--AGTAACT---TGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTG 10244 || || || | | || |||| ||| | | ||| | |||||||||| ||||| Sbjct 15958062 GCAGAGCAAATGGCTCGATGTGGCCATGCAGGTGACAGAGGTGATAGCCTACACGCACTG 15958121 Query 10245 TTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCA 10304 ||| | ||||| || |||||||| ||||| ||||||| ||| | ||||| ||| Sbjct 15958122 CTGCGTTAACCCCGTCATCTACGCCTTCGTAGGGGAGAGGTTCCGGGAGCACCTCAGCCA 15958181 Query 10305 CTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 10355 |||||||| || ||||||||| | |||| |||| |||||||| ||||| Sbjct 15958182 CTTCTTCCGCAGGCACGTGGCCACCAACCTGGGCAAATACATCCCGTTCCT 15958232 Score = 248 bits (274), Expect = 1e-60 Identities = 595/891 (67%), Gaps = 17/891 (2%) Strand=Plus/Plus Query 176358 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 176417 ||| | |||||| || ||||| | |||| || ||||||| | |||||| | Sbjct 15957352 CCCCCACTGTATTCCCTGGTGTTCGTGGTTGGTCTGCTGGGCAACGCGATGGTGGTGGTG 15957411 Query 176418 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 176477 || ||| || ||||| || | || | | | || ||||| || ||| | || ||||| Sbjct 15957412 ATCCTCACAAAATACAGGAGGCTCCGGATCATGACCAACATCTTCCTGCTCAATTTGGCC 15957471 Query 176478 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 176537 || ||||||||||| || || || ||| ||| || ||||| ||||| | | | || Sbjct 15957472 ATTTCTGACTTGCTCTTCCTGTTCACTCTGCTGTTCTGGATTCACTACA---GCAGGTCG 15957528 Query 176538 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 176597 | || ||| || || | | ||||||| || ||| || | | |||||| Sbjct 15957529 AACGAGTGGGTGTTCGGCCACTTCATGTGTAAGCTCCTCTCCGGGCTTTACTACATGGGC 15957588 Query 176598 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 176657 |||||||| || | || | |||||||||||| || ||||| |||| || || | ||| Sbjct 15957589 TTGTACAGCGAGATTTTCTTCATCATCCTGCTGACCATAGACCGGTACCTGGCCATCGTC 15957648 Query 176658 TATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT 176717 | || || || || || | || || || | || || | | | || Sbjct 15957649 CACGCCGTGTTCGCCCTGCGGACCCGGACCGTCACTTTCGGTATCATCATGAGCGTCCTC 15957708 Query 176718 ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGAT 176777 |||||| ||||||||| | | |||||||||||||| |||| ||| |||| || Sbjct 15957709 ACCTGGGGCCTGGCAGGGATAGCGGCCCTCCCTGAATTTGTCTTCCATCAGTCCCAAAAT 15957768 Query 176778 GACAATGGTAGGGTTCAG-TGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGA 176835 || || | || || ||| ||| || |||| || | | | | || |||| Sbjct 15957769 GATGCTGA-ACAGTACATCTGTTTGCCTCTTTATCCAG-GAGGCCAAGAGGATAACTGGA 15957826 Query 176836 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 176895 ||| ||| | | | ||| || | ||||| ||||||||||||| |||| Sbjct 15957827 AGCGTTTCCATGCTCTGAGCATGAACATCCTCAGTCTGGCCCTGCCTCTGCTCATCATGG 15957886 Query 176896 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 176955 | ||||||||| | |||||| || | |||| |||| |||||| || | ||||||| Sbjct 15957887 CCGTCTGCTACGCGGGAATTATTAGGACACTGCTGAGATGCCCCAATAAAACCAAGTACA 15957946 Query 176956 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 177015 |||||||| ||||||| |||||||||||||||| || ||| | || ||||| ||||||| Sbjct 15957947 AGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATGTTCTGGACCCCCTACA 15958006 Query 177016 ACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGA 177075 || | || ||||| || ||| | || || | | |||||| || || | ||| Sbjct 15958007 ACCTGGTCCTCCTTCTCTCTGCTTTCCAAACGA-TCTTCTT----TGAGGTCAGTTGTGA 15958061 Query 177076 GC--AGTAACT---TGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTG 177130 || || || | | || |||| ||| | | ||| | |||||||||| ||||| Sbjct 15958062 GCAGAGCAAATGGCTCGATGTGGCCATGCAGGTGACAGAGGTGATAGCCTACACGCACTG 15958121 Query 177131 TTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCA 177190 ||| | ||||| || |||||||| ||||| ||||||| ||| | ||||| ||| Sbjct 15958122 CTGCGTTAACCCCGTCATCTACGCCTTCGTAGGGGAGAGGTTCCGGGAGCACCTCAGCCA 15958181 Query 177191 CTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 177241 |||||||| || ||||||||| | |||| |||| |||||||| ||||| Sbjct 15958182 CTTCTTCCGCAGGCACGTGGCCACCAACCTGGGCAAATACATCCCGTTCCT 15958232 Score = 127 bits (140), Expect = 2e-24 Identities = 227/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 176877 TTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGC 176936 ||||||||||| | ||| ||||||||| | || | || | ||| | ||||| Sbjct 15918819 TTGCCTCTGCTGGTCATGATCGTCTGCTACACCGAGATCGTAAGGATTCTGCTCAGGCGA 15918760 Query 176937 CCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTT 176996 |||| | |||||||| ||||||| || | || || || ||||||||| | | || ||| Sbjct 15918759 CCCAACGAGAAGAAGGCCAAGGCCGTCCGCCTGATTTTCGTCATCATGATCGTCTTCTTT 15918700 Query 176997 GTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTT 177056 | || ||||| || |||||| | | | || | ||| |||| || | |||||| || Sbjct 15918699 CTCTTCTGGACCCCTTACAACCTGGCCATGCTGGTCTCTGCCTTCCAAGACACCCTT-TT 15918641 Query 177057 AACCTGC-AGTGT--GCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACA 177113 ||| | ||||| ||| ||||| | ||||| |||| ||| | | || | Sbjct 15918640 CACCGACGAGTGTCGGCA--GAGCAAACAGCTGGACGTGGCCATGCAGGTGACGGAGGTG 15918583 Query 177114 GTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTT 177173 | |||||||| ||||| ||| ||||||| || |||||||| |||||||| |||| ||| Sbjct 15918582 ATCGCCTACACGCACTGCTGCGTCAACCCCGTCATCTACGCCTTCGTGGGAGAGAGGTTC 15918523 Query 177174 AGAAGACACCTGTACCACTTCTTCCAC 177200 | || ||||| ||| | |||||| Sbjct 15918522 CGCAGGTACCTGCGCCAGCTGTTCCAC 15918496 Score = 127 bits (140), Expect = 2e-24 Identities = 227/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 9991 TTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGC 10050 ||||||||||| | ||| ||||||||| | || | || | ||| | ||||| Sbjct 15918819 TTGCCTCTGCTGGTCATGATCGTCTGCTACACCGAGATCGTAAGGATTCTGCTCAGGCGA 15918760 Query 10051 CCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTT 10110 |||| | |||||||| ||||||| || | || || || ||||||||| | | || ||| Sbjct 15918759 CCCAACGAGAAGAAGGCCAAGGCCGTCCGCCTGATTTTCGTCATCATGATCGTCTTCTTT 15918700 Query 10111 GTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTT 10170 | || ||||| || |||||| | | | || | ||| |||| || | |||||| || Sbjct 15918699 CTCTTCTGGACCCCTTACAACCTGGCCATGCTGGTCTCTGCCTTCCAAGACACCCTT-TT 15918641 Query 10171 AACCTGC-AGTGT--GCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACA 10227 ||| | ||||| ||| ||||| | ||||| |||| ||| | | || | Sbjct 15918640 CACCGACGAGTGTCGGCA--GAGCAAACAGCTGGACGTGGCCATGCAGGTGACGGAGGTG 15918583 Query 10228 GTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTT 10287 | |||||||| ||||| ||| ||||||| || |||||||| |||||||| |||| ||| Sbjct 15918582 ATCGCCTACACGCACTGCTGCGTCAACCCCGTCATCTACGCCTTCGTGGGAGAGAGGTTC 15918523 Query 10288 AGAAGACACCTGTACCACTTCTTCCAC 10314 | || ||||| ||| | |||||| Sbjct 15918522 CGCAGGTACCTGCGCCAGCTGTTCCAC 15918496 >seq130414 Length=94101111 Score = 168 bits (186), Expect = 8e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| |||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 42658826 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGT 42658885 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| || || | |||||||||||||||||| || || || | || Sbjct 42658886 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCATTCACC 42658945 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| || ||||| || ||||||||||| Sbjct 42658946 ACGTAGAACTGGCAAAGAGCATGGCACGGAGGCAGGGCCAT 42658986 >seq152761 Length=70119229 Score = 147 bits (162), Expect = 3e-30 Identities = 128/157 (82%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| ||| |||| || |||||| || |||||||| |||||||||||||| | | Sbjct 36281117 CAGCGCCGCAGTCTCAGCCGGAGGGTCTTCAGCTTTTCTCCCAGGGAGTTCACGTGCTG- 36281059 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 ||| || || | | | |||||| |||||||||||||||||||||| ||||||||| Sbjct 36281058 -TTTGATG-TCTGGGTCCTCGTTCTCAGCCTGGGGCATCACCTCCTCCAAATAAAACTGG 36281001 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 36281000 ATCATCTCGGACAAGGCTTGGCAACCCAGGTAACCCT 36280964 Score = 113 bits (124), Expect = 5e-20 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||| |||||||||| | |||||||| || ||||||||||| ||||||||||||||||| Sbjct 36283367 TCAGATTTTCATCTTCATTGTCATGTAAGCTTCTATGTAGTTGATGAAGATGTCAAACTC 36283308 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||| |||||||| ||||| || ||||||| Sbjct 36283307 ACCCATGGCTTTGTAGACACCTTTCTCTTGGAGCT 36283273 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/182 (74%), Gaps = 8/182 (4%) Strand=Plus/Minus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| ||||| ||| ||| |||||| || | |||||| ||||||||||||||||||| Sbjct 36279841 AAAGAAAGTCTTCACCTTGCCGAAGGCAGCTCGGAGCTCTCGGAGCATGTGGGGCAGGCT 36279782 Query 138357 G-GTGGGCAATGTAGGGCAGTCGTCCCCAGACTCACTGTCATAT-TTGTTGTC-GGCCCA 138413 | || | | || | ||||| |||| |||| || || | | ||| | | ||| | Sbjct 36279781 GACTGAGAAGTG-GGTGCAGTTGTCCTCAGA--CAGGGTGCTCTGGTGTCGGCTGGCTCC 36279725 Query 138414 CACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGCTAA--TCTG 138471 ||||||||||||| |||||| ||||||| || | || ||| |||||| || |||| Sbjct 36279724 TACCCCGGCCAGGAAGACCAGGAAACACAGAAGTGCTGGGCTGGGCATGGCGAAGCTCTG 36279665 Query 138472 CC 138473 || Sbjct 36279664 CC 36279663 >seq86921 Length=222198629 Score = 136 bits (150), Expect = 5e-27 Identities = 232/333 (70%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 145566 GTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCAC 145625 ||| || | ||| ||||| | | |||||| | || |||||||||| || ||| || Sbjct 104793527 GTGAGGATTGTACCCCTCAATCTGAAAGTCTTTAACCTTGAAGTCATCAATTGTCTCAAC 104793468 Query 145626 CCGCCTCAGGATCCTGAGCCT-GGGAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTC 145683 | |||| | | ||| | |||||||| | || ||| ||| ||||| | ||| Sbjct 104793467 TTTTCAAAGGACCTTAAGCTTCGGGAAAGGCCTTGGTTCTCACTGA--AGCTGCATTTTC 104793410 Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || |||| || || | ||||| | || || || |||| || |||||||| | Sbjct 104793409 AGCAGCTCAACATGACTCAGGTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCATTG 104793350 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 |||| ||||| |||| ||| | | | ||||||| ||||||| ||||||| | || Sbjct 104793349 GGCTTCAGGCCTGTGATGTGTACCATCCTGTAGGTGAGCAGGGCATAGCTGGTGACACTG 104793290 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 ||||||| |||| |||||||| || |||| | |||||||||| ||||| ||||| || Sbjct 104793289 GAGGGCACAACCAGGCCCATGTCTCCTGAGCTCCGGTACAGCTGACAGGACAGCTCACCA 104793230 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAG 145896 ||| |||||||||||| ||| |||||| Sbjct 104793229 TTTTCCAGGTAGAACTGGCAAAGGGAATGGCAG 104793197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588102808705000