Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq14907 264 1e-65 seq77426 206 3e-48 seq52188 122 1e-22 seq120989 105 8e-18 >seq14907 Length=168638799 Score = 264 bits (292), Expect = 1e-65 Identities = 265/343 (77%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||| | ||||| |||||||||||||| Sbjct 18498783 AGCAGGGCTTCGATGTCAGGCTCAATGTCGATGGTTGGAAAGCGGCGGCTGTACCTGCGC 18498842 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || || || | ||||||| ||||||||| ||||||||||| ||||||||||| Sbjct 18498843 ACAGGAACACCATCTGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCGACGTCGTTGCGA 18498902 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || |||||| ||| ||||| | |||||| || Sbjct 18498903 CACACTGGAGACCAGGTGATGAACTTCGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 18498962 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| || | || |||||||||||||| || || ||| || || || ||| Sbjct 18498963 GGGGCAGGCAGAGCTTGGCGCAGGAAGGCGAAGAGGGGGTGCGCCTGCGCGCCATTTACC 18499022 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| || ||| | ||||| |||||||| ||| ||||| ||||||| |||| Sbjct 18499023 TCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTC 18499082 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG-GTGA 83398 |||||| || |||||| | || | ||||| ||||| |||| Sbjct 18499083 AGGGAATTCAGGATCTCTTCGTTTTTAGCGTTCTCCTGCGTGA 18499125 Score = 192 bits (212), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| || ||||| || ||||| ||||| ||||| | || |||| Sbjct 18499353 CCTGATGCCCGAACTGGTTGCATGGGAAGCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 18499412 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 18499413 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 18499472 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | | || | ||||| || || || |||| Sbjct 18499473 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAACCCAGGCTCATGGGCTCCCCGCCGG 18499532 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | ||||||||| ||||||| ||||| || Sbjct 18499533 CCAACGGGCGTGCAGAGAAGGAATACACGGA 18499563 >seq77426 Length=142431058 Score = 206 bits (228), Expect = 3e-48 Identities = 325/461 (70%), Gaps = 11/461 (2%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| |||| || | | ||| | ||| | ||||| ||||||| Sbjct 42058025 AGCAGGGCTTCGATGTCAGGCTTCATGTGGATGGTTAGAAAGCAGCAGCTGTCCCTGCGC 42058084 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | ||| || || | || |||| |||| ||||||||||||||| |||||| || || Sbjct 42058085 ATAGGCACACCATCTGGGCCTACCAGGAACGTCTCGAAGTTCCAGGTGACGTCGGTG-GG 42058143 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||| |||| || ||||| | || | ||| | |||||| ||| Sbjct 42058144 GACACTGGAGACCAGATGATGAACTTGGGGTGGGTCGTGCGCGCAGTGGCGTCGTCACTA 42058203 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| ||||| || ||||||| ||||| || || ||| || | ||| || Sbjct 42058204 GGGGCAGGCAGAGCCTCCCGCAGGAAGGTGAAGAAGGGGTGCGCCTGCGCGCTGTTCCCC 42058263 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 | |||||| || | ||||| |||||||| | | | | | ||| || | || Sbjct 42058264 TGGCACTT-------AGTGTGAAGTTGGGCTCGAACCAGCTACGGCGTGGGAAGTAC-TC 42058315 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| |||||| |||| ||| || ||||| || ||| ||| || || | | Sbjct 42058316 AGGGAATTTCGGATCTCTTTGTTCTTGGCATTCTCCTGATGCACGATCTGCTTGCAAGAG 42058375 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || | ||||| | ||| || | || || || || || |||||||||||||||| | | Sbjct 42058376 AAGCGGAGCACCA-CAGGCCTGGGGC-CCGGGGTGCGGCGGCAGCTCGTTCATCTGGGCG 42058433 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTC 83517 || |||||||| || | |||||||| |||| |||||||| Sbjct 42058434 TAGTCCCGGACGGTTGTGCCTCAGAGCAACGCCACGTTCTC 42058474 >seq52188 Length=152998503 Score = 122 bits (134), Expect = 1e-22 Identities = 192/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 96957722 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 96957664 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 96957663 TGGTGCACCTCTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 96957604 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 96957603 GCGGCTCGCTGGGCAAGAAGCAG-CTGGACCCGTCGCGCATCAAGCTCATCCGCCACTAC 96957545 Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||| |||| |||| ||| | | ||||| |||||||||| ||||| ||| Sbjct 96957544 GTGCAGCTGCTCTACCCCCGCGCCAAG-AACGACCGCGTGTGGACGCTGGAGTTCGTGGG 96957486 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 96957485 CAAGCTGGACGAGCGCTGCCGGCGCCG 96957459 >seq120989 Length=88096124 Score = 105 bits (116), Expect = 8e-18 Identities = 166/236 (70%), Gaps = 19/236 (8%) Strand=Plus/Minus Query 83303 TTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAA 83362 |||||||||||| |||| ||||| | ||| | |||| ||||| | || Sbjct 67049279 TTCTCGAAGAGCCGGAAGTCGGGCTCAATCCCGCTGCCAG-------GTGCTCC--GGCT 67049229 Query 83363 GGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCA 83422 | || |||||| || |||| |||||| |||||||| |||||||| | |||||||| || Sbjct 67049228 GTCAGGATCTCTGCCTTCTTGGCGTTCTCCTGGTGCCCGAACTGATACCACGGGAAGCCG 67049169 Query 83423 AGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCC 83482 ||||| |||| |||| || || | || ||||| ||||||| | |||| | || Sbjct 67049168 AGCACCGCCAGGCCCC--GCGCCGAAGC------GCAGCCAGTTCATCCGGGTGTCCCCC 67049117 Query 83483 CGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATG--AGCAAGACCCGGCCC 83536 |||| ||| | |||||||| | || || | |||| || |||| |||| |||| Sbjct 67049116 CGGAGCGTCGTGCCTCAGAGCCATGCCACCTGCTCGGTGACAGCAGCACCCTGCCC 67049061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606760184455000