Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq52188 100 5e-16 >seq52188 Length=152998503 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| |||||| | || || ||||| || |||||||| || || ||| Sbjct 72323481 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACCGTATTTTTTATCCTGAGG 72323422 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || ||| || || ||||||||||| | ||| |||||||| || Sbjct 72323421 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACACTG 72323362 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||| ||| | || || || || Sbjct 72323361 TGGTGGATTGGAATTAAGTGGGTCGCCGGGGGACA 72323327 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| ||||| || |||||||| ||||||||| | || ||||| Sbjct 72322311 GCATTTTTTGGAGCACAGCTGAATTCCTTCATCCATGTGATTATGTACTCATACTATGGG 72322252 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||||||| ||||| ||||||||| | || | || | Sbjct 72322251 TTAACTGCATTTGG-CCCATGGATTCAGAAA-TATCTTTGGTGGAAAAGATACTTGACCA 72322194 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 72322193 TGTTGCAGCTGGT 72322181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920108418205000