Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq166039 86.0 9e-12 >seq166039 Length=127282370 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || || | || |||| |||||||||| |||| || ||| || | || | Sbjct 53771622 TTCCTTCTGGGTGCTGTGGAAGAGTAGCTCCCAGTTCTGGCTTGGCTGCGAAACACTTCA 53771681 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||| ||||||||| || || ||| Sbjct 53771682 TAGATGTAGGAGCTGGCGTCATAGATGAAGATTATAGACTAAATGTGGGTGTTGTACTAT 53771741 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || ||| | ||| | | || | || ||| |||| | || | || | Sbjct 53771742 TTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTT 53771801 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| |||| |||| Sbjct 53771802 GTGAATGGATTTTTGATCCAGAAAT 53771826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741039071840000