Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq63847 1649 0.0 seq136375 199 3e-46 >seq63847 Length=148068395 Score = 1649 bits (1828), Expect = 0.0 Identities = 1353/1647 (82%), Gaps = 39/1647 (2%) Strand=Plus/Minus Query 107140 TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC 107199 || ||||| || ||| ||||||| |||||||||| ||| || ||| ||| ||||||| Sbjct 45330111 TCCTAGGCCGGTCTTTACTGAGGTTATTTGTCTAGTAAAGGAATGTATTTTTGCCATCAC 45330052 Query 107200 TCTGGAGTTGAACTT--GATGTTCT--------------GGATTAGTTTGTAATTAAAGG 107243 | |||||||| |||| ||||||| || ||||| ||||||| |||| Sbjct 45330051 TTTGGAGTTGCACTTTTGATGTTCCTGTGAATACATTCAGGGTTAGTGTGTAATTGAAGG 45329992 Query 107244 CATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTG 107300 | ||||||||||||||||||| ||||||||| || | | |||||||||||||| ||| Sbjct 45329991 CGTTTTGTTCTGTCCAAGGATTCCATCCTCCTCCTCCGTCCTTGTGCCCAAACTCTACTG 45329932 Query 107301 ATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTG 107360 | || ||| || ||| |||| | |||||||||||| | || | | | | ||| Sbjct 45329931 GTTTCTCATTCCGTGAGGATGATTTGGTGGAAGAAGATACAGTGGCAGCAGCGTTTCCTG 45329872 Query 107361 TGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTT 107420 |||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||| || Sbjct 45329871 TGGGCCCTGGGCTGCTATATGCTGCTGGCCATTGTTGCTCTGAGGCTTTGTCTCAGATTG 45329812 Query 107421 AAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGG 107480 |||||||| | |||||| |||||||| ||||||| || || ||||| | ||||||||| Sbjct 45329811 AAATGTGACTTTGATTCCCTGGATCTGAAGTCCAGAGATTTTCAGAGCCGGCACTGTAGA 45329752 Query 107481 GACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATC 107540 ||||| |||||||| |||||| |||||||||||||||||||||||||||||| ||||| Sbjct 45329751 GACATCTTGTACAAGTCCCTGAAACTGCCAGCAAAGAGATCCATCAACTGTTCTCGGATC 45329692 Query 107541 ACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAA 107600 | | |||||||||| | |||||| | |||| | || ||||||||||| | ||||| Sbjct 45329691 ATCCAAGGGGACCAGCAGGCAGTGATTGAGGCTGTGCTGGACAACCTGGAGATCAAGAAC 45329632 Query 107601 AAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660 |||||| |||| |||| | ||| | ||||| ||||| |||||||||||||||| ||| Sbjct 45329631 AAGCGGAAGCCTTTCACAGACACTGACTACCTTAACATGACCAGAGACTGTGAGCACTTT 45329572 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 ||||| ||||||||||||||| |||||| ||||| |||||||| ||||||||| ||| Sbjct 45329571 AAGGCTGAAAGGAAGTTCATACGGTTCCCTCTGAGCCAAGAAGAGTCAGACTTCCCTATT 45329512 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 |||||||| ||||||||||||||||| || |||||||||||| | |||| ||||| ||| Sbjct 45329511 GCCTACTCAATGGTGGTCCATGAGAAAATAGAAAACTTTGAAAGATTGCTCCGAGCTGTG 45329452 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA 107840 ||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||||| Sbjct 45329451 TATGCCCCTCAGAACATATACTGCATCCACGTGGATGAGAAATCCCCAGAAACTTTCAAA 45329392 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 45329391 GAGGCAGTCAAGGCAATTATTTCATGCTTCCCAAATGTCTTCATGGCCAGTAAGTTGGTT 45329332 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 | ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 45329331 CGGGTAGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGTATGGAAGACTTG 45329272 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 ||||||||| ||||||||||||| |||||||| |||||||| ||||||||||| || ||| Sbjct 45329271 CTCCAGAGCCCAGTGCCATGGAAATACTTACTAAATACATGTGGGACAGACTTTCCTATA 45329212 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 45329211 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGGAG 45329152 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC 108140 || || ||||||| |||| |||||| | |||||||||||| | ||||||| | |||| Sbjct 45329151 TCAGAAATACCTTCCGAGTACAAAAAGACTCGCTGGAAATATCACTATGAGACAAAAGAC 45329092 Query 108141 ACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200 ||| ||||| |||| |||||||||||| |||||||||||||| |||| ||||||||| Sbjct 45329091 ACATTGTACGTAACCAACAAGATGAAGGATCCTCCCCCTGATAACATACCTATGTTCACA 45329032 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 |||||||||||| |||| || || |||| |||||||| |||||||||||| ||||| || Sbjct 45329031 GGGAATGCCTATATTGTAGCTTCCCGAGACTTTGTCCGACATGTCTTAGAGAACCCCAAG 45328972 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 |||| | |||| |||||||||| |||||||||||||||||||| || || || |||||| Sbjct 45328971 TCCCGACAACTGATTGAATGGGTAAAAGACACCTATAGCCCCGATGAGCATCTATGGGCC 45328912 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 || ||||||||||| || ||||||||||||||| |||| |||| |||||| |||| || Sbjct 45328911 ACGCTTCAGCGTGCACCATGGATGCCTGGCTCTATTCCCTACCACTCCAAGTTTCACGTC 45328852 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 ||||| ||| | ||||| |||||||| |||||||||||| ||| |||||| | |||| Sbjct 45328851 TCAGATATGGCAGCCATTGCCAGGCTGGTCAAGTGGCAGGGCCATGAGGGAAACATCAGT 45328792 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 |||||||| ||||||||||| |||||||||||||| | | || | ||||| ||||||||| Sbjct 45328791 ATGGGGGCACCTTATGCACCTTGCTCTGGAATCCACCAGCGGTCTATCTGTATTTACGGG 45328732 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 | || |||||| | |||||||| || ||||||||||||||||| |||||||||||||| Sbjct 45328731 ACTGGAGACCTGCATTGGATTCTTCAAAACCATCACCTCTTGGCCAACAAGTTTGACCCA 45328672 Query 108561 AGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 | ||||||||| ||||| || ||||| |||||||||||| |||||||||||||||||||| Sbjct 45328671 AAGGTGGATGACAACGTTCTTCAGTGTTTAGAAGAGTACTTACGTCATAAGGCCATCTAT 45328612 Query 108621 GGGACTGAACTTTGAG----------------CTGC--ACTGTGGGCCAGGGAC-TGTGC 108661 ||||||||||| |||| ||| ||||||| || | || |||| Sbjct 45328611 GGGACTGAACTCTGAGATAAACTATAAGAGGATTGCTACCTGTGGGGCAAGAACATGTGG 45328552 Query 108662 CAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCAT 108721 |||| | | | |||| || ||||||||||| ||| |||||| || |||| | Sbjct 45328551 ATACATACTTCAGATGGGCTGGGACAATGTGGGGTGGGAGACCAGGGCTCTGCAATCTGT 45328492 Query 108722 GGCATCCCCCAGGGTCAGAGGGCTGCT 108748 ||||| ||||| | | || |||||||| Sbjct 45328491 GGCAT-CCCCAAGTTTAGGGGGCTGCT 45328466 >seq136375 Length=94492513 Score = 199 bits (220), Expect = 3e-46 Identities = 589/890 (66%), Gaps = 31/890 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || || |||||||| || || || ||||| ||| | || Sbjct 18194194 CCCCTTAGTAAAGAAGAGGCGGAGTTTCCCATTGCGTATTCTATAGTGGTTCATCACAAA 18194253 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 18194254 ATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATCTCTACTGCATT 18194313 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || ||| || | || | ||||| | || ||| |||||| Sbjct 18194314 CACGTGGACAGAAAATCCGAGGATTCCTTTTTGGCCGCGGTGATGGGCATCGCCTCCTGC 18194373 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || |||||| |||||||| || ||| ||||| |||||||| ||| | Sbjct 18194374 TTCAGTAACGTCTTCGTGGCCAGTCAGCTGGAGAGCGTGGTGTATGCCTCTTGGAGTCGG 18194433 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC--CATGGAAGT 107985 ||||| || ||||| ||||| ||| ||||| | || ||| | | ||||| |||| || Sbjct 18194434 GTGCAGGCCGACCTCAACTGCATGCAAGACCT-CTACAG-GATGAGTGCGGACTGGAGGT 18194491 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || ||||| || || ||||| ||||| |||| | Sbjct 18194492 ACTTGATAAATCTTTGCGGCATGGATTTCCCTATTAAAACCAACCTGGAGATTGTCCGGA 18194551 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCCa 108102 ||||| ||| | |||| | |||| | ||||| ||| | || || | | Sbjct 18194552 AGCTCAAATCGTTAATGGGTGAAAACAACCTAGAGTCCGAGAGAATGCCATCCAA---TA 18194608 Query 108103 aaaaaaaTCGCTGGAAATACCGCTAT---GAGGTGACAGACACACTGTACCCTACCAGCA 108159 ||||| | | |||||| | | ||| | || | | | ||| ||| ||| Sbjct 18194609 AAAAAGAAAGGTGGAAAAAGCATTATACAGTTGTTAATGGAAAGCTG-ACCAACACAGGG 18194667 Query 108160 A--GATGAA--GGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215 | || || | ||||||| | ||| | ||| ||||| |||| | |||||||||| Sbjct 18194668 ACGGACAAAATGCACCCTCCTCTTGAAA---CGCCCCTGTTCTCAGGCAGTGCCTATTTT 18194724 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGT 108274 |||| | | | | ||| |||| |||| || || |||| ||| | | Sbjct 18194725 GTGGTCAGTAGGAAGTATGTGGGCTATGTGCTAGAGAATGAAAAGATCCAGAAG-TTTAT 18194783 Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334 || |||| |||||||||||| || || || || | ||||||||||| | ||| | | Sbjct 18194784 GGAGTGGGCCAAAGACACCTACAGTCCGGATGAGTATCTCTGGGCCACTATCCAGAG-GA 18194842 Query 108335 TCCGTGGA-TGCCTGGCT--CTGTTCCT-AGCCACCCCAAGTATCACATCTCAGACATGA 108390 ||| | | | || |||| |||| ||| ||||| |||||| |||| || |||||| Sbjct 18194843 TCCCCGAAGTCCCAGGCTCACTGTCCCTAAGCCA---GAAGTATGACATGTCTGACATGC 18194899 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 || ||||| ||| ||||||||||||||||| || || || ||| || |||||| | Sbjct 18194900 ACGCGATCGCGAGGTTCGTCAAGTGGCAGTACTTTGAAGGTGACGTCTCCAAGGGGGCCC 18194959 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 | || | |||||| || |||| | | | | || | | ||| || || ||| Sbjct 18194960 CCTACCCGCCCTGCAGCGGGGTCCACGTGCGTTCTGTGTGTGTCTTCGGAGCAGGTGACT 18195019 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || ||||||| || | || || ||| | || || |||||||||||| || Sbjct 18195020 TGAACTGGATGCTACGCAAGCACCACTTGTTTGCCAACAAGTTTGACACG 18195069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347132858729250