Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq86921 138 9e-28 >seq86921 Length=222198629 Score = 138 bits (152), Expect = 9e-28 Identities = 379/579 (65%), Gaps = 20/579 (3%) Strand=Plus/Plus Query 20039 ATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTAT 20098 |||||||||| | | || || |||| |||| | ||| || ||| | || ||||| Sbjct 104792839 ATGAATTTCCTCTGCTGACAACCAAACCTGTATCCTAGAAGGGTGTTTTGGAGGAGTTGC 104792898 Query 20099 TATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTT 20158 | |||||||| || ||||| ||||| || || || || ||||| || || | Sbjct 104792899 TGTGGTTTATCAAGGGATCCACAAACGCTTGGGAACTGTCTTCCAAGGGAGTGAAAATCT 104792958 Query 20159 GGAGCGCACATGGATC-TAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 || | || |||| || | || | | || ||||| | | ||| |||| | |||| Sbjct 104792959 GGGACTCAAATGGGTCCTGAG-ACCTCTTGGACAGCCA-GTATTCTGCAACAGAGAAGAA 104793016 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 ||||| || || || || ||| ||||| |||| | ||| || Sbjct 104793017 GGGGACTTAGGCCCAGTTTATAACTTTCAGTGGAAA--------------ATACAAAGAT 104793062 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 | ||| || |||||| ||| ||||||||||| ||| | ||||| || | | | ||| Sbjct 104793063 AAGAATTCAGATTATTCTGGTCAAGGAGTAGACCAACTGCAAAAGGTGACTGACACAATC 104793122 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| ||| | ||||||||||| || | || | ||||| | |||||| | ||| Sbjct 104793123 AAAACCAACTGTGATGACAGAAGAATCATCCTGTGTGGGTGGAATCCAAAAGATCTCCCT 104793182 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 ||||||||| |||| || ||| || ||||| || ||| | | ||| ||| || Sbjct 104793183 TTAATGGCT---CCTCTCTGCCATTCCCTTTGCCAGTTCTACCTGGAAAATGGTGAGCTG 104793239 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || ||||| |||| | | || | || ||||| |||| ||| || | || | | | Sbjct 104793240 TCCTGTCAGCTGTACCGGAGCTCAGGAGACATGGGCCTGGTTGTGCCCTCCAGTGTCACC 104793299 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 || ||||| ||||| || || | ||| | ||| | |||| | || | |||||| Sbjct 104793300 AGCTATGCCCTGCTCACCTACAGGATGGTACACATCACAGGCCTGAAGCCCAATGACTTC 104793359 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | || || | ||||| || ||||||||||| | |||| Sbjct 104793360 ATACATACTTTGGGAGATGCACATATTTACCTGAGTCAT 104793398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397881989655625