Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq139997 86.0 5e-12 >seq139997 Length=61081816 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || |||||||| || | | || | |||| Sbjct 9479387 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 9479446 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | ||| |||||||| Sbjct 9479447 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCC 9479506 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| || | ||||||| | Sbjct 9479507 TGGATCTTAGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 9479566 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| || || || || ||||||||||| Sbjct 9479567 TTGCCAGTCAGGGTCTTCACGAAGATTTGCATTTT 9479601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378106701380625