Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq159875 114 1e-20 seq24225 98.7 9e-16 seq113784 93.3 4e-14 >seq159875 Length=83953389 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 48395283 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 48395342 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||| |||||||||||||| || || || ||||| || || || ||||||||||| | Sbjct 48395343 TCAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCTGCAAAAG 48395402 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 48395403 CCACCACTCTTTCCCC 48395418 >seq24225 Length=140925898 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||||| || ||||| || Sbjct 133421816 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 133421875 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | || || |||||||||||||| ||||| ||||| || ||||| || Sbjct 133421876 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCC 133421935 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 133421936 ACAACCCGCTCTCC 133421949 >seq113784 Length=115468741 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||| ||| Sbjct 60449002 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 60448943 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 60448942 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 60448883 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 60448882 CTGTTTCTTATACCAT 60448867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| || || || | | |||| Sbjct 60430490 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 60430431 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | | ||||| || | |||||||||||| | | Sbjct 60430430 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 60430371 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||| ||||||||||| Sbjct 60430370 ATATGCTGTGGTCTTTC 60430354 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| || || || | | |||| Sbjct 60431930 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 60431871 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | | ||||| || | |||||||||||| | | Sbjct 60431870 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 60431811 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||| ||||||||||| Sbjct 60431810 ATATGCTGTGGTCTTTC 60431794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466957438130000