Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq77426 187 3e-42 seq24225 132 6e-26 seq113784 125 9e-24 seq159875 91.5 2e-13 >seq77426 Length=142431058 Score = 187 bits (206), Expect = 3e-42 Identities = 154/188 (82%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | |||||||||| ||| |||||||||| ||||||| Sbjct 91306310 TTTTTATTAACTGCTTCCAAAAACCGCAACAGATGCAGGAATAGATTGATGACATCCAAG 91306369 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| |||||||| || ||| |||| || || ||||| Sbjct 91306370 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTATGCATCAGGGAGTGT 91306429 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || | ||||| || ||||| |||| Sbjct 91306430 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCCACAGCAGCCAAGACCAACTCC 91306489 Query 9411 ACTGTTTC 9418 |||||||| Sbjct 91306490 ACTGTTTC 91306497 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| ||||| |||||||||||||||| | ||||| Sbjct 91313292 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGCAGAGTATATGCAGTCAAACCAAGA 91313351 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || || ||||||| || | || | ||||||||||| ||| Sbjct 91313352 AATACGGCAGTAGTCAGTATAAATGCTTGCAGAATAATATATATATCATAGAAAGAAAC 91313410 Score = 105 bits (116), Expect = 9e-18 Identities = 86/102 (84%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||| Sbjct 91325372 CCATTCGGATGTGCACACTGGCAGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 91325431 Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCGG 9945 | |||||||| | ||| | || |||| | ||||||| ||| Sbjct 91325432 TCGAGGAGCAGGGGTACCGGGGGTCGGGGTCGGCCATGTCGG 91325473 >seq24225 Length=140925898 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 133421814 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 133421873 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| ||||| || || ||||||||||| |||||||| ||||| ||||||| Sbjct 133421874 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 133421933 Query 36300 CAATAAGTCTCTCTCC 36315 | | || | |||||| Sbjct 133421934 CCACAACCCGCTCTCC 133421949 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | ||||||||||| || ||||| |||||||| ||||| Sbjct 133424001 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 133424060 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 133424061 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 133424106 >seq113784 Length=115468741 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 60449002 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 60448943 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 60448942 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 60448883 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 60448882 CTGTTTCTTATACCATA 60448866 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | ||||||| | Sbjct 60438785 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 60438726 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| |||||| | | ||| || ||||||| Sbjct 60438725 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAAATGTCTAAATGCCA 60438666 Query 66176 CGGTTCCA 66183 || |||| Sbjct 60438665 AGGCTCCA 60438658 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 60425509 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCTGCCAGGA 60425450 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 60425449 TGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 60425390 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 60425389 GTTCCACAGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 60425344 >seq159875 Length=83953389 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 48408051 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 48408110 Query 36716 TATTGAATTGGAAAAATAACAAATC 36740 || || |||||||| || ||||||| Sbjct 48408111 TACTGGATTGGAAAGATGACAAATC 48408135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655971006305000