Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq130414 143 2e-29 seq52188 109 5e-19 seq86921 82.4 7e-11 >seq130414 Length=94101111 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||| ||||||||||||||| || | Sbjct 42658824 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGG 42658883 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||||||||||||||||||||||||| || || Sbjct 42658884 GTACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCATTCA 42658943 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||| ||||| || | | | || || ||||| || |||||| Sbjct 42658944 CCACGTAGAACTGGCAAAGAGCATGGCACGGAGGCAGGGCCATC 42658987 >seq52188 Length=152998503 Score = 109 bits (120), Expect = 5e-19 Identities = 209/304 (69%), Gaps = 3/304 (1%) Strand=Plus/Minus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTA 2949 || ||||||||| | ||||| || ||||| ||| ||| | || | | || || Sbjct 51604140 CTTATAAACAGAACTACCTCCCATTACCCAAACCATGTCCAGTTTATGTGCTAATTCTGG 51604081 Query 2950 TTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 ||| || ||| | || || ||||| || || || | || ||||| || | ||| || | Sbjct 51604080 TTGCTCAATA-AGTTTTAAGGCATCATCCAGACTTTTAGCAAGAAAATGAGTTCCTTGTG 51604022 Query 3009 GTGGTTCACGTAA-TTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTC 3067 | ||||| | | |||||| || | || ||||||||||||| | | ||| | ||| Sbjct 51604021 GAGGTTCCTGGAGGTTCTCTACTAAGAACTATATTAATTCTGTCCTTTAAAGGTTGATTC 51603962 Query 3068 TTTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACA 3127 || | || || || |||||||| | | |||||||| |||| ||||| || |||| | Sbjct 51603961 TTCTTGGGAATAGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCT 51603902 Query 3128 ACCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAA 3187 || |||| || | |||||| | || |||||| | | ||| || || || |||||| Sbjct 51603901 ACTGATGAGGTTGTGGTCATTCTTTGGAAATACTTGAATTCATTCCTGAGCGGCGGCCAG 51603842 Query 3188 GGCA 3191 |||| Sbjct 51603841 GGCA 51603838 >seq86921 Length=222198629 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 21364 CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGG 21423 |||| | | | | |||||| | | |||||| ||||| || || | |||||||| Sbjct 104792988 CCAAGAGGTCTCAGGACCCATTTGAGTCCCAGATTTTCACTCCCTTGGAAGACAGTTCCC 104792929 Query 21424 TGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483 | || ||||| ||| |||||||||||||||||||||||| || ||| || | | | Sbjct 104792928 AAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCTAGGATA 104792869 Query 21484 CCCTTTTGGTGGTTAACAGAGGAAACTCGTCCC 21516 | |||||| || | ||||||||| || |||| Sbjct 104792868 CAGGTTTGGTTGTCAGCAGAGGAAATTCATCCC 104792836 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| || || || ||||| || || | ||||| || ||||||| |||| ||| Sbjct 104793389 GTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCATTGGGCTTCAGGCCTGTGATGTG 104793330 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 | ||| || || || ||||| ||||||| || | | || || | |||||||| Sbjct 104793329 TACCATCCTGTAGGTGAGCAGGGCATAGCTGGTGACACTGGAGGGCACAACCAGGCCCAT 104793270 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 ||| | || ||| |||||||||| ||||||||||| || ||| ||| ||||| || Sbjct 104793269 GTCTCCTGAGCTCCGGTACAGCTGACAGGACAGCTCACCATTTTCCAGGTAGAACTGGCA 104793210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426380731710000