Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq24225 100 3e-16 >seq24225 Length=140925898 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 133420303 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 133420361 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 133420362 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGTGAAATATTCTC 133420421 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 133420422 CATAAAGTCAAATGGATTT 133420440 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 133421814 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 133421873 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 133421874 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 133421933 Query 14014 C 14014 | Sbjct 133421934 C 133421934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478123159925000