Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq36986 87.8 1e-12 >seq36986 Length=206538554 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| ||||||||| | ||||| || ||||| |||||| | || |||| ||| ||||| Sbjct 16385391 AGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCC 16385332 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTT 43030 ||||| |||| | ||| | ||| | || | |||| || || |||| || ||| Sbjct 16385331 AGCAAAGATCAGACTCTGCTCATCAGGAGGAATTTCTTCCTTATC-CTGAATCTTGGCTT 16385273 Query 43031 TGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAG 43090 | | || | | ||| || | ||||| || || | || || ||||| || || | Sbjct 16385272 TCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTTTCCTGTAAGGG 16385213 Query 43091 TTTTCACAAAAATTTGCATTTT 43112 ||||||||||||||||||| || Sbjct 16385212 TTTTCACAAAAATTTGCATCTT 16385191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380125694522250