Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq139997 86.0 4e-12 >seq139997 Length=61081816 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/234 (68%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| || | |||| |||| |||| ||||||||||| || || ||||||||||| Sbjct 9479371 ACCGCCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 9479430 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | || |||| ||||| || ||| || | | |||||||| | ||| Sbjct 9479431 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 9479490 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||| || || || | | | ||| || || ||| || ||||| |||| | Sbjct 9479491 GATGCCCTCCTTATCCTGGATCTTAGCC---TTCACATTTTCGATGGTGTCACTGGGCTC 9479547 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || || || || || || || || || ||||| |||||||| || Sbjct 9479548 CACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTTT 9479601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317737849577250