Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq159875 111 1e-19 >seq159875 Length=83953389 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 48395283 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 48395342 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || || ||||| || |||||||| | Sbjct 48395343 TCAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCTGCAAAAG 48395402 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 48395403 CCACCACTCTTTCCCC 48395418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 12803 TAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATTTT 12861 |||||||| ||| || | || |||| ||| || || | || |||||| | | Sbjct 48385368 TAAAAATCTGCATCCAGGGTGAAGACATTATCTGTAGTT-TCTGCCATAACTGCAAAACG 48385426 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||| || ||||| ||| ||||| || |||||||| ||||| || ||||| ||||| Sbjct 48385427 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTC 48385486 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||||||||| || ||||||| Sbjct 48385487 CATAAAATCAAAGGGATTTT 48385506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429576673460250