Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq139997 158 3e-33 seq36986 152 1e-31 seq159875 129 1e-24 seq86921 122 2e-22 seq77426 114 3e-20 seq52188 114 3e-20 seq166039 113 1e-19 seq24225 89.7 1e-12 seq96624 86.0 1e-11 seq90522 86.0 1e-11 seq1 84.2 5e-11 >seq139997 Length=61081816 Score = 158 bits (174), Expect = 3e-33 Identities = 171/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || ||||| | || || |||||||| || || || ||||| | Sbjct 9478691 CCCCTC--AGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAA 9478748 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 |||| | || ||||| || || || || ||||| || |||||||| || |||||||| | Sbjct 9478749 GAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGAGGGA 9478808 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | ||||||||||| || ||||| || || |||||||| | ||| || || || || |||| Sbjct 9478809 TGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCT 9478868 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || ||||| || || || || || || || |||||||| Sbjct 9478869 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 9478914 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || |||||||| || || || ||| Sbjct 9479141 ATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 9479200 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || |||||||| || |||||| Sbjct 9479201 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 9479260 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || ||||| || || |||||||| | ||| || || || || Sbjct 9479261 GGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 9479320 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || || || |||||||| Sbjct 9479321 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 9479370 >seq36986 Length=206538554 Score = 152 bits (168), Expect = 1e-31 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 16385400 ACGAGATGAAGTG--GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 16385343 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || ||||| | ||||||||| ||| |||| ||||||||| Sbjct 16385342 AGTTGCTTGCCAGCAAAGATCAGACTCTGCTCATCAGGAGGAATTTCTTCCTTATCCTGA 16385283 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| | | |||||| ||||| ||||| ||||| | | || ||||| Sbjct 16385282 ATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTTT 16385223 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| ||||| ||||| || ||||| ||| Sbjct 16385222 CCTGTAAGGGTTTTCACAAAAATTTGCATCTTG 16385190 >seq159875 Length=83953389 Score = 129 bits (142), Expect = 1e-24 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | || |||||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 48395418 GGGGAAAGAGTGGTGGCTTTTGCAGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCT 48395359 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| ||||||||||||| |||||||| ||| | ||||| || || ||| | Sbjct 48395358 GCTATATTCTGGCTGAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTC 48395299 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 48395298 ATCAGCAGAGATGAAG 48395283 >seq86921 Length=222198629 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || || ||||| || ||||||||| ||| || ||||| ||| Sbjct 27230158 AGATGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATGTCCATCTTCCAGT 27230217 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || | || || || || || || ||||||||||| |||||| |||||||||||| Sbjct 27230218 TGCTTGCAAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTTCTTATCCTGAATC 27230277 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||||| ||||| ||||| ||||| || || || |||| | Sbjct 27230278 TTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGATCTTCCTC 27230337 Query 104534 GTAAGTGTTTTTACAAATATCTGCA 104558 || | ||||| | || ||||||| Sbjct 27230338 ATATGGGTTTTCATGAAAATCTGCA 27230362 Score = 116 bits (128), Expect = 8e-21 Identities = 147/200 (74%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT-CC 104421 || ||| ||||||| | | || ||||| ||||| | | ||||| || | ||| || Sbjct 189842766 GTCGATCCTTTCTGGGTGCTGTAATCAGAAAGAGTGCGGCTATCTTCCAGCAGCTTTGCC 189842825 Query 104422 AGCAAAAA--TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||| | |||||||| || ||||| || ||||||||||| || ||||| ||| Sbjct 189842826 TGCAAAAAGGTGAGCCTCTGCTGGTCAGGGCAGATCCCTTCTTTATCTTGGATCTTAGCT 189842885 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||| || || || || ||||| || || || ||||| ||||| || Sbjct 189842886 TTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGG 189842945 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || |||| |||||||| Sbjct 189842946 GTCTTCGCAAACATCTGCAT 189842965 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| |||| ||||| || ||| | || ||||| || ||||| ||| Sbjct 160875151 GTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTTGCCA 160875210 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || ||||| | || || || || | || | || ||||| Sbjct 160875211 GCAAAAATCAGACACTGCTGGTCAGGCGAGATGCCCTCCTTGGCTTGGACTTTGGCTTTG 160875270 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || || || || || || ||||| || | || ||||| || | || || Sbjct 160875271 ACATTCTCACTAGTGTCACTGGGCTCAACCTCGAGGGAGATGGTCTTGCCCATCAGGGTC 160875330 Query 104543 TTTACAAATATCTGC 104557 | ||||| |||||| Sbjct 160875331 TCCACAAAGATCTGC 160875345 >seq77426 Length=142431058 Score = 114 bits (126), Expect = 3e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || ||||| || || || ||||| |||||| |||| |||||||| Sbjct 120888963 CCATCTTCCAGTTGCTTGCCAGCCAAGATCAGTCTCTGATGATCAAGAGGAATTCCTTCC 120889022 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || ||||| || ||||||||||||| |||| ||||| | ||| || || Sbjct 120889023 TTATCTTGGATCTTGGCCTTTACATTTTCTATTATATCCAAGGGTTCAATCTCGAGAGTG 120889082 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||| |||| || ||| ||||| | | |||||||| |||| Sbjct 120889083 ATAATCTTCCCCATAAAAGTTTTCATGGAAATCTGCATCTTGT 120889125 >seq52188 Length=152998503 Score = 114 bits (126), Expect = 3e-20 Identities = 148/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || |||||| | || | || ||||| Sbjct 98898413 ACAAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAAA----GTACATCCATCTTCC 98898468 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| | | ||||| ||||||||| | |||||| || |||| Sbjct 98898469 AGTTGCTTGCCAGCAAAGACCGGTCTCTGCTGATCAGGAAGAGTTCCTTATT----CTGA 98898524 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || ||||||||||| |||| |||||| ||||| || || || ||||| Sbjct 98898525 ATCTTGGCCTTCACATTTTCTACTGTATTTGAAGGTTCAACCTCAAGAGTGATGGTCTTC 98898584 Query 104531 CCAGTAAGTGTTTTTACAAATATC 104554 || |||| ||||| || || ||| Sbjct 98898585 CCCATAAGAGTTTTCACGAAAATC 98898608 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | |||||||| | || || | || || | || || ||||| | Sbjct 72323481 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACCGTATTTTTTATCCTGAGG 72323422 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || |||||||||||||| | ||| |||||||| || Sbjct 72323421 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACACTG 72323362 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| |||| || ||||||| Sbjct 72323361 TGGTGGATTGGAATTAAGTGGGTCGCCGGGGGACAAG 72323325 >seq166039 Length=127282370 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || | || ||||| || |||||| | || | || ||||| ||| Sbjct 52665478 AGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAAA----GTACATCCATCTTCCAGT 52665533 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||| || || || ||||| |||||| |||| | |||||||||||| || ||| Sbjct 52665534 TGCTTGCCAGTGAAGATCAGTCTCTGATGATCAAGAGGAAGTCCTTCTTTATCTTGGATC 52665593 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||||| ||||| ||||| | ||| || || ||| |||| || Sbjct 52665594 TTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAATCTCAAGAGTGATAATCTTCCCC 52665653 Query 104534 GTAAGTGTTTTTACAAATATCTGCA 104558 ||| ||||| | | ||||||| Sbjct 52665654 ATAAAAGTTTTCATGGAAATCTGCA 52665678 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 104360 AATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT 104419 || || ||||||||||| | ||| ||| | || ||||| | || || || || ||||| Sbjct 110596385 AAGGTGGATTCTTTCTGGAGATTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTG 110596444 Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||||||||| | ||| || | ||| || | || || || || || || || | | Sbjct 110596445 CCCGCAAAAATTAGACGCTGCTGGTGAGGTGGGACGCCCTCCTTGTCTTGGATTTTGGTT 110596504 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || ||| || || || | |||| || || ||||||||||| | || Sbjct 110596505 TTGACATTCTCAGTGGTGTCACTGGGCTTGACCTGGAGGGTGATAGTCTTACCCATCAGA 110596564 Query 104540 GTTTTTACAAATATCTGCAT-TTTGTGTACA 104569 | || ||||| |||||||| | ||||| || Sbjct 110596565 GGCTTCACAAAGATCTGCATCTCTGTGTCCA 110596595 >seq24225 Length=140925898 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 133420445 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGCAAGACTAACTTCTTT 133420386 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 133420385 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 133420326 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 133420325 TTTACCTTGGATGCTGACTTCTAA 133420302 >seq96624 Length=569 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| |||| ||||| || ||| | || ||||| || ||||| ||| Sbjct 490 GTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTTGCCA 431 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || ||||| | || || || || | || | || ||||| Sbjct 430 GCAAAAATCAGACACTGCTGGTCAGGCGAGATGCCCTCCTTGGCTTGGACTTTGGCTTTG 371 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || || || || || || ||||| || | || ||||| || | || || Sbjct 370 ACATTCTCACTAGTGTCACTGGGCTCAACCTCGAGGGAGATGGTCTTGCCCATCAGGGTC 311 Query 104543 TTTACAAATATCTGC 104557 | ||||| |||||| Sbjct 310 TCCACAAAGATCTGC 296 >seq90522 Length=781 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| |||| ||||| || ||| | || ||||| || ||||| ||| Sbjct 80 GTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTTGCCA 139 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || ||||| | || || || || | || | || ||||| Sbjct 140 GCAAAAATCAGACACTGCTGGTCAGGCGAGATGCCCTCCTTGGCTTGGACTTTGGCTTTG 199 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || || || || || || ||||| || | || ||||| || | || || Sbjct 200 ACATTCTCACTAGTGTCACTGGGCTCAACCTCGAGGGAGATGGTCTTGCCCATCAGGGTC 259 Query 104543 TTTACAAATATCTGC 104557 | ||||| |||||| Sbjct 260 TCCACAAAGATCTGC 274 >seq1 Length=240380223 Score = 84.2 bits (92), Expect = 5e-11 Identities = 147/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || | || || || |||||||| ||||| ||||| || ||||| ||| Sbjct 75947362 AAGGACCAGGTTCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGTGGTTGTC 75947421 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| ||||| || || |||| | | | | || ||| | || || || || || || Sbjct 75947422 CTCTAGCTGTTTGCCCACACAAATCATACGCCGCTGGTCAAGCGGGATGCCCTCCTTGTC 75947481 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || || ||||| || || || | |||||| | | || || || || || || || Sbjct 75947482 TTGGATTTTGGCTTTGACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGT 75947541 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || | ||| || |||||||||||||| Sbjct 75947542 CTTGCCCATC--TGTCTTCACAAATATCTGCAT 75947572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147450317853500